Scaffold Ga0119956_1000464

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119956_1000464

Scaffold Ga0119956_1000464

Overview

Basic Information
Taxon OID	3300014053 Open in IMG/M
Scaffold ID	Ga0119956_1000464 Open in IMG/M
Source Dataset Name	Contaminated water microbial communities from Hexachlorocyclohexane (HCH) contaminated sediment in Lucknow, India - Pond Sediment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Delhi
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3051
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Sediment → Contaminated Water → Contaminated Water Microbial Communities From Pond Sediment In Lucknow, India

Source Dataset Sampling Location
Location Name	India: Chinhat, Lucknow
Coordinates	Lat. (^o)	26.5389	Long. (^o)	81.2022	Alt. (m)		Depth (m)	.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034114	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119956_10004644	F034114	GGAG	MPVILKETSVAAGAVNENILAGSAFEFARQNSLVSIGIHQSATGGFATIQAGADIVAEEFSVPIATTYPVIPDNMYFSDVAAAGDRLVIRYRNPTGGALVVRVVAQVTPL*

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