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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014050 Open in IMG/M |
| Scaffold ID | Ga0119952_1016724 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Institute of Technology |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2589 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011753 | Metagenome / Metatranscriptome | 287 | Y |
| F039993 | Metagenome / Metatranscriptome | 162 | Y |
| F039994 | Metagenome | 162 | N |
| F091592 | Metagenome | 107 | N |
| F102824 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0119952_10167241 | F011753 | N/A | AGRCDAYVRLKGIGDAIIDLKNRKVNPKYDPFYDTDCAQLWAYKYASENPKCACVSVVLAANDPKVLKTHQWAEDELYEAGIAFQAMLKVWAWSKKYVPPGMKL* |
| Ga0119952_10167243 | F039994 | N/A | MTPPTIEEMGNAASEIVWKVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVVRALFAWMQLKKGLPRL* |
| Ga0119952_10167245 | F039993 | N/A | MKLSLAWLLYNVGNILSYGVSRYGYGYSLYNKIMLLSSDLDDKGIIWKDVK* |
| Ga0119952_10167247 | F102824 | AGGA | MTPVRVQREGEKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFEDKGKAQDAADLWNCYHEWCKERSGKRKRR* |
| Ga0119952_10167248 | F091592 | GGA | MISAQLTKGDENDRIKQLAGEVAIQAIQDIRLLQRRGVLDGMRITKNRIGKLSDCNCYRHIKEVRSLVRDFKNGTVLFWCRVAGIRIGQNTLNRLIAESKNNVN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |