Scaffold Ga0120381_1005883

Overview

Basic Information

• Taxon OID: 3300014047
• Scaffold ID: Ga0120381_1005883
• Source Dataset Name: Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Missouri
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3364
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 41.314168
  • Long. (^o): -105.584589

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065282	Metagenome / Metatranscriptome	127	Y
F092990	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0120381_10058833	F092990	AGGAGG	MSKSDQIALGRNQGLDLARRIVAQAQQDGADPLKALDMEIRSRHIIGIAAKMTKSEWEKEFAAAMELAYKAAMVIAMAVLWGDFGWGGVKRLPKFCNAYLNYLMEIGRQNTSITELVDLLETKAGVHVDLAEKGFTADFRKAKGKDRIA*
Ga0120381_10058835	F065282	N/A	MDCEVVAMTEERHECRTYTEMLAVLRKAKADGHTAWWNSEELRAGILIVYVRKEDNNG*