Scaffold Ga0120336_1007

Overview

Basic Information

• Taxon OID: 3300013966
• Scaffold ID: Ga0120336_1007
• Source Dataset Name: Human oral microbial communities from various locations - University of British Columbia - SCG38
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of British Columbia
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1292
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Oral → Marine And Human Oral Microbial Communities From Various Locations - University Of British Columbia

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043991	Metagenome	155	N
F051214	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0120336_10071	F043991	GAG	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFVGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0120336_10072	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVIRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDMIDLKDEWIV*