3300013966: Human oral microbial communities from various locations - University of British Columbia - SCG38

Overview

Basic Information

• IMG/M Taxon OID: 3300013966
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118603 | Gp0137825 | Ga0120336
• Sample Name: Human oral microbial communities from various locations - University of British Columbia - SCG38
• Sequencing Status: Permanent Draft
• Sequencing Center: University of British Columbia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 342242
• Sequencing Scaffolds: 1
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine And Human Oral Microbial Communities From Various Locations - University Of British Columbia
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Oral → Marine And Human Oral Microbial Communities From Various Locations - University Of British Columbia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043991	Metagenome	155	N
F051214	Metagenome	144	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120336_1007	All Organisms → Viruses → Predicted Viral	1292

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120336_1007	Ga0120336_10071	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFVGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0120336_1007	Ga0120336_10072	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVIRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDMIDLKDEWIV*