Scaffold Ga0181296_101191

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181296_101191

Scaffold Ga0181296_101191

Overview

Basic Information
Taxon OID	3300013886 Open in IMG/M
Scaffold ID	Ga0181296_101191 Open in IMG/M
Source Dataset Name	laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 40C L1 15gl 40C L1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	UNIVERSIDADE DE SAO PAULO
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4712
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Laboratory Microcosms → Microbial Communities From Methanogenic Microcosms From Oil Petroleum Samples

Source Dataset Sampling Location
Location Name	Newcastle Upon Tyne, United Kingdom
Coordinates	Lat. (^o)	54.97825278	Long. (^o)	-1.61778056	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047698	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181296_1011912	F047698	AGGAGG	MQQATAIVGVLIGFLILTQIGIFVCDAMIGASSVNESSQLYEAQEEAIATFVQCLSIVRILLIVAIVAVVFQYLQGAGLIPGFGGQRQGGY*

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