Scaffold Ga0181296_100597

Overview

Basic Information

• Taxon OID: 3300013886
• Scaffold ID: Ga0181296_100597
• Source Dataset Name: laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 40C L1 15gl 40C L1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: UNIVERSIDADE DE SAO PAULO
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7952
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Laboratory Microcosms → Microbial Communities From Methanogenic Microcosms From Oil Petroleum Samples

Source Dataset Sampling Location

• Location Name: Newcastle Upon Tyne, United Kingdom
• Coordinates
  • Lat. (^o): 54.97825278
  • Long. (^o): -1.61778056

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015738	Metagenome / Metatranscriptome	252	Y
F017851	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181296_10059710	F015738	GAGG	MPDPDRPSPVMWAKVDTDLYQDLEDAIGEVFPGEPDRVRLAAVKVWGIIMSRVPASDRIEGMSWCRHFDRAIDCRLVKEDRPACIEERNGCAHCPESTYRVRRGPDR*
Ga0181296_1005972	F017851	GGAGG	MTPTLSRQFFETFPPEVARAILEGRPLRIHAAKVSVVREAGTTGFAIDTLPRDGRPKEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*