NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120043_100059

Scaffold Ga0120043_100059


Overview

Basic Information
Taxon OID3300013783 Open in IMG/M
Scaffold IDGa0120043_100059 Open in IMG/M
Source Dataset NameMarine microbial communites from Sargasso Sea - Prochlorococcus B258 80m rep 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUCI
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1938
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001607Metagenome / Metatranscriptome664Y
F056432Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0120043_1000591F056432N/ALYTRARVAEFERATHDLDWQQVSEISLDVAKLKKASQKWQNNMNAQEAVSLKNLKEQALMQSLMQQNGSVQPIRKVEM*
Ga0120043_1000593F001607AGGMPVLANNVSLTAGSSSVNIFDNTNYQFVNEGTEIRVSAAVVGANDGVQGSNVNYRFTINNTEFADDAIVPTLVTGEPFTDGATSYRTNSVIATGQARNRPLLVFRNQTSGTLVVKFFVFISQQA*

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