3300013783: Marine microbial communites from Sargasso Sea - Prochlorococcus B258 80m rep 1

Overview

Basic Information

• IMG/M Taxon OID: 3300013783
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118605 | Gp0137431 | Ga0120043
• Sample Name: Marine microbial communites from Sargasso Sea - Prochlorococcus B258 80m rep 1
• Sequencing Status: Permanent Draft
• Sequencing Center: UCI
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5113175
• Sequencing Scaffolds: 2
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F001607	Metagenome / Metatranscriptome	664	Y
F006008	Metagenome / Metatranscriptome	384	Y
F029759	Metagenome / Metatranscriptome	187	Y
F056432	Metagenome / Metatranscriptome	137	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120043_100033	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2215
Ga0120043_100059	Not Available	1938

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120043_100033	Ga0120043_1000331	F000754	VVAAGDATGTYSGQVTMDFTVNNAEFSKDAIVSEEVTGEAFGWRGGYVLNDMVTTGQVRNRPVITFTNGSGSSATVDVAVFIGG*
Ga0120043_100033	Ga0120043_1000333	F029759	MITYFHVFWALAALNVFVFGVSLYALAHVRSTNKALNDLDWETLANLTGEVGAMKRSLQKTNSRISGMTSSDPAAILSELPKLQNVTQPNGRVGG*
Ga0120043_100033	Ga0120043_1000335	F006008	MPLVKKRLTIAAGATSDQVLQGTTYEYVDPGTQLVVAAGDATGTYSGQVTM
Ga0120043_100059	Ga0120043_1000591	F056432	LYTRARVAEFERATHDLDWQQVSEISLDVAKLKKASQKWQNNMNAQEAVSLKNLKEQALMQSLMQQNGSVQPIRKVEM*
Ga0120043_100059	Ga0120043_1000593	F001607	MPVLANNVSLTAGSSSVNIFDNTNYQFVNEGTEIRVSAAVVGANDGVQGSNVNYRFTINNTEFADDAIVPTLVTGEPFTDGATSYRTNSVIATGQARNRPLLVFRNQTSGTLVVKFFVFISQQA*