Scaffold Ga0120043_100033

Overview

Basic Information

• Taxon OID: 3300013783
• Scaffold ID: Ga0120043_100033
• Source Dataset Name: Marine microbial communites from Sargasso Sea - Prochlorococcus B258 80m rep 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: UCI
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2215
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F006008	Metagenome / Metatranscriptome	384	Y
F029759	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120043_1000331	F000754	N/A	VVAAGDATGTYSGQVTMDFTVNNAEFSKDAIVSEEVTGEAFGWRGGYVLNDMVTTGQVRNRPVITFTNGSGSSATVDVAVFIGG*
Ga0120043_1000333	F029759	N/A	MITYFHVFWALAALNVFVFGVSLYALAHVRSTNKALNDLDWETLANLTGEVGAMKRSLQKTNSRISGMTSSDPAAILSELPKLQNVTQPNGRVGG*
Ga0120043_1000335	F006008	GGAG	MPLVKKRLTIAAGATSDQVLQGTTYEYVDPGTQLVVAAGDATGTYSGQVTM