Scaffold Ga0120045_100359

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120045_100359

Scaffold Ga0120045_100359

Overview

Basic Information
Taxon OID	3300013782 Open in IMG/M
Scaffold ID	Ga0120045_100359 Open in IMG/M
Source Dataset Name	Marine microbial communites from Sargasso Sea - Prochlorococcus B258 surface rep 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	UCI
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	997
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008886	Metagenome / Metatranscriptome	326	Y
F068232	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120045_1003591	F068232	GGA	MEYVNLIALACSFAAFVLSIIAGARVGKFQRSTADTDWA
Ga0120045_1003593	F008886	N/A	EGEPFGASENSNYILNNMVTTGAIRNRPIITFTNSTAATRTVDVAVFIGN*

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