Scaffold Ga0119972_1097565

Overview

Basic Information

• Taxon OID: 3300013759
• Scaffold ID: Ga0119972_1097565
• Source Dataset Name: Intertidal thrombolitic mat microbial community from Highborne Cay, Bahamas - Thr-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Florida
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 513
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus cobalaminigenes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Microbialites → Intertidal Thrombolitic Mat → Intertidal Thrombolitic Mat Microbial Community From Highborne Cay, Bahamas

Source Dataset Sampling Location

• Location Name: Bahamas: Highborne Cay
• Coordinates
  • Lat. (^o): 24.43
  • Long. (^o): -76.49

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087322	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119972_10975651	F087322	N/A	SCDIYPTSTSVDLQALRFGFVLTLLLVFKMIQAGTGEACFVFFNRRIFLGDDLRAAIDFQA*