Scaffold Ga0119799_100421

Overview

Basic Information

• Taxon OID: 3300013749
• Scaffold ID: Ga0119799_100421
• Source Dataset Name: Human oral microbial communities from Los Angeles, CA, USA - S13-03-R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Los Angeles
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36428
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (90.24%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119799_1004212	F018385	GGAG	MAEYENQWGPYKENSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0119799_1004219	F027205	N/A	MRAVKESEEFERKALAAARKRDRAEGKPPRDVLHPDHKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*