Scaffold Ga0117822_106481

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0117822_106481

Scaffold Ga0117822_106481

Overview

Basic Information
Taxon OID	3300013726 Open in IMG/M
Scaffold ID	Ga0117822_106481 Open in IMG/M
Source Dataset Name	Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA - CF1-1-St-MgMD-nonhuman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	San Diego State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	867
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Respiratory System → Sputum → Unclassified → Human Lung → Lung Microbial And Viral Communities From Cystic Fibrosis Patients In San Diego, Usa

Source Dataset Sampling Location
Location Name	USA: San Diego
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054109	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117822_1064812	F054109	AGGAGG	MVGRPKSKKGTKVHTAFKIYPVDKERAQAMADKLDMSLSAYINKAVLEKVERDEKSEN*

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