Scaffold Ga0117783_106620

Overview

Basic Information

• Taxon OID: 3300013674
• Scaffold ID: Ga0117783_106620
• Source Dataset Name: Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (fresh isolate) - PDam_NLN_DNA_SISPA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Institute of Marine Science
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 620
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Coral Tissue → Coral Viral Communities From The Great Barrier Reef, Australia

Source Dataset Sampling Location

• Location Name: Australia: Great Barrier Reef
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073582	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117783_1066202	F073582	AGGAG	MTVLKKDYEAVFKEGFKLGTRLARAKINLMRANDSRMINDEPMMKHYQEYAETWTQLAKNCGRKFTPPVAHSLSQPTIDLGDVELLNHKYDDKPEDEHGYLQS