3300013674: Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (fresh isolate) - PDam_NLN_DNA_SISPA

Overview

Basic Information

• IMG/M Taxon OID: 3300013674
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118633 | Gp0137664 | Ga0117783
• Sample Name: Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (fresh isolate) - PDam_NLN_DNA_SISPA
• Sequencing Status: Permanent Draft
• Sequencing Center: Australian Institute of Marine Science
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9986723
• Sequencing Scaffolds: 48
• Novel Protein Genes: 57
• Associated Families: 51

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2
Not Available	26
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	6
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium REDSEA-S34_B6	1
All Organisms → Viruses → environmental samples → uncultured virus	1
All Organisms → Viruses	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Coral Viral Communities From The Great Barrier Reef, Australia
• Type: Host-Associated
• Taxonomy: Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Coral Tissue → Coral Viral Communities From The Great Barrier Reef, Australia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: Australia: Great Barrier Reef
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F000479	Metagenome / Metatranscriptome	1092	Y
F000502	Metagenome / Metatranscriptome	1073	Y
F000999	Metagenome	809	Y
F001120	Metagenome / Metatranscriptome	772	Y
F001650	Metagenome	657	Y
F001905	Metagenome	619	Y
F002215	Metagenome / Metatranscriptome	582	Y
F003751	Metagenome / Metatranscriptome	470	Y
F007475	Metagenome	350	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117783_100400	All Organisms → cellular organisms → Bacteria	2129
Ga0117783_100620	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1927
Ga0117783_100634	Not Available	1913
Ga0117783_100727	Not Available	1843
Ga0117783_100732	Not Available	1840
Ga0117783_100759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1818
Ga0117783_100798	Not Available	1793
Ga0117783_100897	All Organisms → Viruses → Predicted Viral	1738
Ga0117783_101392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1499
Ga0117783_101406	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1492

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117783_100400	Ga0117783_1004003	F007475	MQEAVEIFALYNRSTKWEGNKNIVGDFNLPQDVANFDPSVIAMTLTDSLKRDETGGLNRSGKAFNTTNRMIAMVNKLFNKAPTVLDDIKFGIVNKPLSEFTNVFEAGLLQAGDYINGELLDAAVNTSNMDAGTYNPETAQDTVVDAGLYINV*
Ga0117783_100620	Ga0117783_1006204	F042317	MELIISILGAAGLGHLVADFLSQFDRLPEKPCKCNMCMTFWLNVGPFIFLYGYEGVMYAALASIVSELYLKYLL*
Ga0117783_100634	Ga0117783_1006341	F037769	LCRYQTDKEDEKLLRRLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTKEESNQLIKEYDILSSTTKEVIMNPPPNFNATAPNDVKDYSTNLWQARKCLSDAKKLINATALTPRDYENDEDFHEALLHRLHIAEHFISINKYIDEHLDFAKAHIPPQAP*
Ga0117783_100634	Ga0117783_1006345	F088913	MINGKYVSAKIRRGVIKEVTLKQNSCGAKIPHYQVLWDHQSSPSLVSQHRISAE
Ga0117783_100637	Ga0117783_1006371	F040063	MLDLSYMIQDMTTERTEERRNRFTGIREFLTKDDICR
Ga0117783_100727	Ga0117783_1007274	F083262	MRDPNIDRYLHEMAMLFQNLGIESSPEERIYAKEEERRYIRKIYDLDPEMGKRLG*
Ga0117783_100732	Ga0117783_1007322	F081888	MSKGALAKLLKRVAKEGVFTPFGSKDDIQNYVLSEVRRGALPKKRQEYFDTFNPNVYFHSTIQDIDKFDPQMDSSVGAYGDTLTRGATYFTSDRELANQVLDDKRILTQAQYMRQKSNLPMGKYPDFDFDTVYNPKTDEEFLSGSQIYPVKIKTDKIFDFDNIDDLEKLEVKIIKDYSDLSDEYKLVNRVATGEWSILERPQIQKALKELGFRGYKTSEPGTVGLFYPDEGDVRSLFAKFDPKDEKKGEILATIVPYASVSTIGALVGLDEGT*
Ga0117783_100759	Ga0117783_1007591	F001650	MAKTLVILILLFDGTLVKERLDFSRPMDVHECLMFADDHRETISKYVDTKGWVLNDGRGTIQGFICE*
Ga0117783_100798	Ga0117783_1007982	F001905	MFPFYIRMTILLCVGGFAPILIHHLIMELWDVGILRAAEYTFIVCIPIAVWMAEKINERWNDEDQ*
Ga0117783_100897	Ga0117783_1008972	F042317	METILSILGAAGLGHMAADFFYQFDRLPDKPCKCNMCMTFWLSVGPFIFLSGGVGIFYAALASIVSELYLKILL*
Ga0117783_101392	Ga0117783_1013923	F087052	SADIHLYLNPSGAGGASREDGGTHTLGLSDFDRVWFAREVLFSFSMLRSFRVF*
Ga0117783_101406	Ga0117783_1014064	F015717	MTQDKLEYQFKKAFLEQESEKYVEYLCEPRTKPEVYAAIEKIALIQLQIKNCDDIIYTANIPEFDDPLF*
Ga0117783_101490	Ga0117783_1014902	F082547	MEFETYADVIDSYNSGVGVEAGESLTDYIKRNNIKIKEIDMDPIGDFEKILKGKAPMENEGIMEASARTIDPKVTMQEVVMEFIRKKKRRPRNVDELKEFYFMEMSANEKGMTPDRMKVAYNPGDYTQDEIDAYENYKYNMNEQMPGFPIMEIDEFLRMEEGQGRLGVRAGGLPGILGV*
Ga0117783_101626	Ga0117783_1016261	F024547	MKDNKDYTRRNRFNGETVELTKEEAEKHDKIFYHEALATLEDICR
Ga0117783_101855	Ga0117783_1018552	F024809	MNYSQKVLFDDWISKCPIEGVFVDEPVSQVKMDDGQFGYLVKVFLTINKEDWEQNQTPPGFSENLPSQNRL*
Ga0117783_101904	Ga0117783_1019041	F007475	ALQISGKYTITDVPNPNSFTVVYPFTQTTGGYVTVENLKKHEYVGAWLLEPSDKPIGKGLESWEKRWAKEKRKMQEAVEIFALYNRSTKWEGNKNIVGDFNLPQDVANFDPSVIAMTSTDSLKRDETGGLNRSGKAFNTTNRMIAMVNKLFNKAPTVLDDIKFGIVNKPLSEFTNVFEAGLLQAGDYINGELLDAAANTSNMDAGTYNPETAQDTVVDAGLYINV*
Ga0117783_101904	Ga0117783_1019043	F002215	ALQISGSIGAFAGITRALGNFNKKLDRRFENIEKNVEKLKYEVLHDYVLKEDFLREMQAVHSKLDRILDHLLNK*
Ga0117783_101906	Ga0117783_1019062	F044149	MMDNLETITDPIEEVLELMVKHQLAVVADKKLDLARVIGRLQSQLIKTKETNKNFNEQWKFLHDTHEDLMGQVERIYGV*
Ga0117783_102060	Ga0117783_1020603	F008424	METQVNKYERALYLLIICGICFFCGVFYTYYKIDQRTWNEDILKARDIETRYLNYPTKRNYKKEDLERIIYGTN*
Ga0117783_102060	Ga0117783_1020605	F016667	MKINKNLRRVLVTVALVSTSFALGTQNGEQNILNRWENRWFESKWYDLQSIEDILYDKDYSIELGE*
Ga0117783_102203	Ga0117783_1022031	F090491	MIFKFLCAILGIFLLTGSAYAQKEGLLLRQTSEIVNTYCAIAEKLSEAQKDEKKIFMGFIDQSNVLQVSTGENGFWSITVENASGIACVYFMGQMGTVLIEQKPKISAE
Ga0117783_102570	Ga0117783_1025702	F022858	MNAVLKNLKTILTYADSEFLELLIAILHTFLLPVAVISEMGFKWHIIIIAILGGSFQLYSVGIRNLKCRYYSCAIATVVSLWTALEYGVNGLFIEAPSRYGWLIIALAAIVNQLRITKQYRGL*
Ga0117783_102570	Ga0117783_1025703	F047307	MRGNLYISVPAADKDNGLPASITRYDWNEYTYDEDGAVDTTTVVHPTWAKYGEKYKADYGAPVSVTADEVEYIVYELTASWKDSEVSALVALGSGQAEPNYTVMTAEEARAFILDNSPAQL*
Ga0117783_102612	Ga0117783_1026123	F045688	MIMDTMLRGTVGSTGFFACMGLQSINGIVSLVVGIMTFVFLGLSIYKLLKELK*
Ga0117783_103209	Ga0117783_1032092	F093973	SADILNMVVVTNLNRRLKSPADKAVQEGKPIAKFITGPTRSAQDFQAPDPFLGKFKTNPRSDSFYQMFADPEISQADIDNKVGFYGNTFEGENNFRAQEFLNKYHANLGGSNTAEGKGLIEPDRIVRPENLAQLSSQPAASSSGVADPNVTGKFPSNSVAV*
Ga0117783_103326	Ga0117783_1033264	F043627	MIPETPLLHCCCNEDHFADVNVDIRPEVFPDVVCDVTEKLPFEKNQFAAAFADFPWINEWRWKSARAIREMLRVAPIVYTISPWPYGAKICKPEFIQVSWRPGINAPILFVKYVRNEETFWKEYDKKKVISAE
Ga0117783_103453	Ga0117783_1034534	F073646	MLQSEYLELAIELYDIYSAHDIHHRRWLTARELQRLKGGPGLIAKVKNKKGKMSGLKPVFVDYVNTQRQYRSCNTPQQWSCKFDYWLQDEYEFTTEELDELRSDRGRQSRRETSQEVTI*
Ga0117783_103521	Ga0117783_1035212	F011769	MANPNFKGRPVGSGKSTFIEDPLMGNYKIAIDEYSYNVIDTNKGKTVGYHTSLPQAILSIAKYLMLKDKTFTLTQYAKEFKETHLQLKEAILK*
Ga0117783_103522	Ga0117783_1035222	F100988	MSALKKKLPKLKAATSSKLLKACEINDLRKNYNKLWVNVKEDTLPIVEELGGFTVGKIKNKEYSLEIIKKNVTRFDVKKFKECHPLIYKDFLIDGESVELKTKYKKI*
Ga0117783_103747	Ga0117783_1037471	F003751	ALQISGNQIGRLSSFNHEGVKGWPGVEAFELIGFHKISNKSGSKANHKSFNITIPSPDRRPDDRVRDDRSSLVVNASSDRPAYIYQASIAIGQDIPSGGLPSYPASPVTADIGGTNTEVILLGPDNGGAPLGVPSTQQNGLAAATSTLTFSGTTIAQGTSNVSVGKLPFWTVVTGGGITAANAANSMMYKVTANTTFKIYNVDGVTSTAVNGDGLFISDDDHTAGKAAYIICRVNYLRPAAGVSFSDIQGFIDFASQTGGNDE*
Ga0117783_103861	Ga0117783_1038612	F068936	MKLIFNIMSAASFGISLILVGVIIYLNMTKQQRIDENRKYMLEVIEKMVDTRIQQSMPPTTGKVNVGNK*
Ga0117783_103898	Ga0117783_1038982	F064807	MTKWIQSLNNKDRESFLEFCKKTASPVQIYLFSRFLGFQGTIVECNEWSEKEFKKRNFHLVLESGIDICR
Ga0117783_103930	Ga0117783_1039302	F000999	MDIEKVEKKFKEIHEKSDFVVSWWAKKYKKTIRRIGNMSKSGCRTWEQGGKKYMTFWDTVIERYTTCIDPVITYKKARN*
Ga0117783_104574	Ga0117783_1045741	F050306	MTDYLDIKKRKDVTVKNMFKLYKTDNKYRNRITWDAHYLITGWKHIQQTKDERQK*
Ga0117783_104574	Ga0117783_1045742	F009067	MKDKSKQVWYLYAYDIKELKRQCYDVISTLYVQLGQTPEAEIIVQMTNLFCKDLATNYGSMELEEVRFALNKHIRENDGPHFVNVPMWNKALRSYKMSKALKRQTNQIDQYELYKKRVE*
Ga0117783_104631	Ga0117783_1046311	F017911	MYAMGGGVKGRKYAAKGGGMKKTKYMAGGGATKGSKYMARGGAMKGSKYMAAGGYLQ
Ga0117783_104783	Ga0117783_1047832	F003751	MATYKSSAGAILQPGNQINKLSGYNDEGVFGWPGIEAFELIGFAKVTNLSGDKASFKSFDLTVPSPDRRPDDRVRDDRTTLVVQASSDRPAYIYGASIGIAQDIPAGGLATFPASPVTADLGGTTGELLLLGPANGAVPFGVPGTQLNGLAAATSTITAGSSLFAQGAGDTTVADIPFWTTVSSSIARADAANSMMYKVTADTTFKVFNVDAVTDTSVSGDGVFISQADICR
Ga0117783_104840	Ga0117783_1048401	F057998	MIDGEVAFVSICFVLFVSTLLIAFSFRKKKMGTDIWTGKGIIADESEVVAFINGKNKKLVIKTCQEFYEELLDQYKEEPEEWRKQLVDDFDGIYNISTKATIAEIRRALQSVVKVEGEVSKYGDCYVEHSEYLMDLFNKLFEACDLDIPYLDNVVAFGSARYNGWDVPLGVACFVFSSDQCFVRTLSEEGKNLKKMIGHCEESEWTDISY*
Ga0117783_105142	Ga0117783_1051422	F099415	MSFYHGLGMFIFGMGATIFGAIIAYFIINKVMEKKEDPKRFDDLE*
Ga0117783_105467	Ga0117783_1054672	F050306	MIDYLDIKKRKEVTVKKMFEIYKNDNKYRNRITWDAHYLITGWKHIQQTKDEKK*
Ga0117783_105563	Ga0117783_1055632	F092069	MTTVIFEYNGKSKEIPIDEIKSVNDVADAYATLGLKTKQPIKRRLYYTLPNGKHHSFLSNKNHKYAVACTDEDTVLGFCYTDDYAKAVTTAANWSNKYKYPNKKFVVVDVQEVE*
Ga0117783_106145	Ga0117783_1061451	F007475	ALQISGEYTITDVPNPNSFTVVYPFTQTTGGYVTVENLKKHEYVGAWLLEPSDKPIGKGLESWEKRWAKEKRKMQEAVEVFALYNRSTKWEGNKNIIGDFNLPQDVANFDPSVIAMTLTDSLKRDETGGLNRSGKALNTTNRMIAMVNKLFNKSPTVLDDIKFGIVNRPLSEFTNVFEAGLLQAGDYINGELLDAAANTSNMDAGTYNPETAQDTVDICR
Ga0117783_106480	Ga0117783_1064802	F000502	MEVVGRLLMILSGFILTMLGVITFIHGGEHQSLGILISFAGVVSMFGGLPNHD*
Ga0117783_106513	Ga0117783_1065132	F000999	MKDIIKTIEDNTDFIVSWKAIKYNKTIFRVGNLNKEGCRVWEQNGKKYMCFWDTVLERYTTCINPMITYKKERN*
Ga0117783_106535	Ga0117783_1065352	F018189	MELSKEQMEKVIYELECNYNSKIFDDENLIIIINLFKDYLNKGESK*
Ga0117783_106535	Ga0117783_1065353	F057382	MSKNDLTIAELKQLISTITFFQLGARTKELKTIKVKLKNQLKEMESNASI*
Ga0117783_106620	Ga0117783_1066202	F073582	MTVLKKDYEAVFKEGFKLGTRLARAKINLMRANDSRMINDEPMMKHYQEYAETWTQLAKNCGRKFTPPVAHSLSQPTIDLGDVELLNHKYDDKPEDEHGYLQS
Ga0117783_106644	Ga0117783_1066441	F012654	MTVEQTKKYNDLLNQYEQRADLTPGQCQLLYTLACVIIEEHQLQTYCDANGTCYQVVGKSGDTYSRMRPEWQQLKEARHRKQIIITRLENWIGEGKPAVDDNAEYFS*
Ga0117783_106767	Ga0117783_1067672	F082789	MGKHKAPFLNNEVISLIENNKSPEQRLWIGVLAQAFSDAFKSTDERAAMDALRWIRHGQDFNYVCHLAGRNGDYIKARMLDKVVERESSIIMKRFHNQKGIDNVIKLKISAELVTYTQLTMLARDNAEY*
Ga0117783_106944	Ga0117783_1069442	F095404	LCRYLTNYTTDKVKLAYMYVEHLRHNWRELDDTRKQKLLQQISELTNVDFIVEQYESKL*
Ga0117783_106977	Ga0117783_1069771	F088540	MRGNVYISIPASDKDNALPSGITRYDWNTYTYDDDGAVDTTTLVHPTWAEYGEKYKGDFGAPVSVTKDDVEYIVYELELSWLDSEISQLVALGSGYLQS
Ga0117783_107166	Ga0117783_1071662	F001120	MTRKRSAFNFDKTVGGFNITERGVKSFSKSIKLGPFLFTMNARGSGIRGSVGIPGTGLSKRNIKLF*
Ga0117783_107187	Ga0117783_1071873	F046428	MMLDRPASTSTLVRTQTGQLFSSSLLPTSIGNVTKVFDVDQGLTDTQISGAYIDEIFIRYSKDVNIVMDPVISAE
Ga0117783_107506	Ga0117783_1075062	F000352	MATNGFEKTNFKTIKLTEGDATFVHYVLRMYAQQTPGLDSDDKAEINEVAAKFK*
Ga0117783_107602	Ga0117783_1076023	F038719	MDSKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKAHDDLDQYQFGVTRKIMHDICR
Ga0117783_108089	Ga0117783_1080891	F020903	MSDQLDIFGFDVSQLEEVKIDNPTTLSEVLNNIAVDMVYCLKQSVKKEGLVFEGGLEESIRMPVKMFGTVMSATLYMADYYDFVNKGVRGIGGKRKSGVNAGQPWELKAPESPYKFRKGPKVSHIKKWAKSKGLNEYAVRTSIAHKGIRPRYFFDICR
Ga0117783_108137	Ga0117783_1081371	F000479	MSKAVNILEVLEKAHVSQASVSKKNKQAIIDAYGRALTMKKVLDDFIKVNRNLIIDMGIGENANLLHGKDYSLHVSQKLSVKVDTNLVKEKLGELEYHKCKVPTQYKQIQALPIEEATVRKNKKATIEEVADFKISAE