Scaffold Ga0117785_100045

Overview

Basic Information

• Taxon OID: 3300013617
• Scaffold ID: Ga0117785_100045
• Source Dataset Name: Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (liquid nitrogen) - PDam_LN2_DNA_MDA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Institute of Marine Science
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2305
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Coral Tissue → Coral Viral Communities From The Great Barrier Reef, Australia

Source Dataset Sampling Location

• Location Name: Australia: Great Barrier Reef
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000713	Metagenome / Metatranscriptome	925	Y
F029759	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117785_1000451	F029759	N/A	MFINIYAFYALLACNLSVFLFALYAHARVRANEKVLLDLDWETLADLTGQVGALKRSLQKTNNRINGMTSSDPVSVLSELPVLQQAPQVQNGQFNGG*
Ga0117785_1000453	F000713	GGAG	MPLVKKRLTIAAGATSDQVLQGTTYEYVDPGTRLVVAAADNSGTYSGDVVMNFTVNNAEFAKDTVVSEGVSGEAFGWNNTGYVMNDMVTTGQVRNRPVITFTNNDSASATIDVAVFIGG*