Scaffold Ga0120127_10000190

Overview

Basic Information

• Taxon OID: 3300013503
• Scaffold ID: Ga0120127_10000190
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14558
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002821	Metagenome / Metatranscriptome	528	Y
F020047	Metagenome	226	Y
F026952	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120127_1000019016	F026952	GGCGG	MPETSSYYHVAYTVALSIYSVYALSLYIRRKRLRVKK*
Ga0120127_100001906	F002821	GGA	MRIATTSRVGAATRGLGLAAVLLASACLQSTAPQPSVLQLSGAWNYTGVQTAPVRAALTGTLTISRESGTSFQGRLDLTSADQQTGVPTLLTGLVSGSASGTDVIDFDADLDLVRRHVGQIVADTITGTWIGSAPDGTMSSGTFRVEREPR*
Ga0120127_100001908	F020047	GGAGG	MSVSTSGAILLALILCASPVAAQKTILTLAGTAVTFPAPTAADYVAGYVDAPTGMTFTINAQTGASRTTTVAVRSSSANLGGGKVIGDLQWRRSDLATWNSITLTDAQVEQRIVVRGTSNDPWNNTIFFRLLLSWTTDAPATYTANYVITLSQTVP*