Scaffold Ga0177922_10526972

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0177922_10526972

Scaffold Ga0177922_10526972

Overview

Basic Information
Taxon OID	3300013372 Open in IMG/M
Scaffold ID	Ga0177922_10526972 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	714
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.844722	Long. (^o)	-79.573889	Alt. (m)		Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011218	Metagenome / Metatranscriptome	293	N
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_105269721	F011218	N/A	MQYYTNPAKRRKIDFILEECATLMANCEHTYNARQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN*
Ga0177922_105269723	F039112	N/A	MTLSFSSDVYTEMVQVQQAQIQALQNKVQELEARIEVLEQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.