Scaffold Ga0177922_10420024

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10420024
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13580
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012433	Metagenome / Metatranscriptome	280	N
F030060	Metagenome	186	N
F045612	Metagenome	152	Y
F081046	Metagenome	114	N
F086811	Metagenome	110	N
F093506	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_1042002411	F045612	N/A	MKYQYTYEDFMHSLKWLEAEGYIEQFIDEDGNVCIRICEGAENCEL*
Ga0177922_1042002412	F012433	GAG	MSSDQVAELQERLSTVREAIARIEERQQNIISVLERHTSELAQWSGKINSKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKARVLYK*
Ga0177922_1042002419	F093506	AGGA	MPATIISNISGFDYEPDIITDNGRDGISSFQFSIVGSFSSLDSNFSLDQDVTGVPDQPTGSFRVVRRNLSHIAGDGDTGLYRLQVTAEGGTGNNSLFILETSYQYQKEIVNGFVQLPTTDVAINYACEWLSPTATITTNSQTEDVAAVQNQAISVLASLQVQIIRNKPDTIAPVGIVQYPVLGLGIDSESVIISGSSIEKAGGLYRVRASATKGQIQQLI*
Ga0177922_104200243	F030060	GGCGG	MIRGVITSESPEIHWEHLDVAGGRMLDLGCAFWTEAERQEGNGTTKYFLSQKPEFYMGVDINQGDINILSQQYPQAKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGDVCNLKEIAIELHYSDAWLKEFGEWFKSIGFEFYRHDSVYFCPEISVIYGRLKC*
Ga0177922_104200245	F081046	GAG	MTAKTIKYSQRLGDIIRCLPACKYLADQGHEVFFDCLPQYHGIFEMVSYVKTGNKGDIIDLEIWPNKYQEYRGSNKTWTEFVYSHPAINKADSTNIIFDKLDDAPAKGLPAEYNMVAPFGISQGEKQDPLKIIVEARNKAGANNFIVLAPEGFRISGLETYTAPSVSEMARAIRGATEFYAINSAPMTIAAGVRKEKKVIFYPQKIEPFDKDNLFIWDSVELN*
Ga0177922_104200248	F086811	N/A	MISPQFKIEDALASLLTPISGLNVVISNRTGARLFPYATIKASIGRQYIVPYSGVFEVTAEINYSDSATRTTQAIFDATYYDVFAALYSNNNTLVTKVQDNVTDLKVFMGRITSQTPTIRADKRAWQRGLTLSFIVTPDANADGLRDYDFSDALNSFYLGTI*