Scaffold Ga0157375_10167914

Overview

Basic Information

• Taxon OID: 3300013308
• Scaffold ID: Ga0157375_10167914
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2340
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046806	Metagenome	150	N
F094834	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157375_101679144	F094834	GGCGG	MSHLPTCRTRKELTGNVWVYYSDPDRNCQDTSHVDAYTEETQ*
Ga0157375_101679147	F046806	AGGAGG	MNPVSPMHAAWLVRLVCGRHVEEAPLNETGGEYVARSIRSCAALTASLGARVNPIFMHEVIRLLEELHEVHAGTHPDLEQNQALTVNNAPDLIDRLQQQISAAVQDLLAHTEPLTRRSEDKVPA*