Scaffold Ga0163162_10520603

Overview

Basic Information

• Taxon OID: 3300013306
• Scaffold ID: Ga0163162_10520603
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1319
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032135	Metagenome	180	Y
F046806	Metagenome	150	N
F094834	Metagenome	105	Y
F104372	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163162_105206031	F104372	N/A	AYTLPVEHGRPRTPKPGYEPISQDEWAEIIHLARTQRTEEAITAYARKRTA*
Ga0163162_105206032	F046806	GAGG	MSPVSGMHAAWLVRRVCGRHVEEAPLNETGGEYVARSIRSCAALTATLGARVNPIFMHEVIRLLEELHEVHAGTHADLRQNQALTINNAPDLIDRLQQQISGAVQELLAHTEPLTRRAEDRIPA*
Ga0163162_105206035	F094834	AGGAGG	VAHTPSCRTRKELTGNVWVYYSEPDRNCTDQSHVDAYTEESQ*
Ga0163162_105206036	F032135	AGGAG	MTPDPLDPAEQAAYRELDQTRRIPDCAPNCICKQDDAMTTPLEIEDYQ*