Scaffold Ga0157378_11328016

Overview

Basic Information

• Taxon OID: 3300013297
• Scaffold ID: Ga0157378_11328016
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 761
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001935	Metagenome / Metatranscriptome	615	Y
F033892	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157378_113280161	F001935	GAG	LYIKHLTSLQFLTYVGFFAVVLAAMFKFVPGKAPPVRTEPYPEDELGAHDRKTAKYFVAGGFFLVLGSLHMAVKNLPWAAEYLARTGYAGHLVRDLSDTHVMIVGGGTLLSTGLCWLVLPRIVGRPLSSEGLAQCA
Ga0157378_113280162	F000280	AGAAGG	MAAREPDQEPRQAPARPLVGYRDVGEDVRHSRSTTIRAWVILAVLMAFYLGWTLVIFFLEPGLR*
Ga0157378_113280163	F033892	N/A	HCYTTWDTPEQLEAFLERGYTFDRMLVDVAGITAQPTLVMEKVF*