Scaffold Ga0157374_10000008

Overview

Basic Information

• Taxon OID: 3300013296
• Scaffold ID: Ga0157374_10000008
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 588863
• Total Scaffold Genes: 600
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 327 (54.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004159	Metagenome / Metatranscriptome	450	Y
F010067	Metagenome	309	Y
F043999	Metagenome / Metatranscriptome	155	Y
F056859	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157374_10000008420	F010067	N/A	MTDDDQRSDEARETFAYFSNEYAQALQAFKTIEGQSSTLLLMGVSDELRGFIDQFITMASGTKALAEERGETHFAEWFGELIRKAEALRGEIVPQ*
Ga0157374_10000008539	F056859	N/A	VQRPQVTMLGREAYATFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRMLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0157374_10000008590	F043999	N/A	MEKPVRRTLLPGVSDAGAPPPVVIDSRVVVARARRRAIVRDVIDLLLLVCVDGLFLRWNHAHVPFLDRHDSLLVLLALNAMLVGYVWLARALPRWTARRVAATWCLAERTRFFRS*
Ga0157374_1000000890	F004159	GGAG	MPNTRDDDHERAAAGMDYDFPIREKATQLGNALAESGPEALFEEIENLLPESWREHIRTFPIAAVILGAGVGVWLGMRKGDEIIAAGTAMITSAAMQNVTNVMQHATGGGED*