Metagenome Family F056859

Basic Information
Family ID	F056859
Family Type	Metagenome
Number of Sequences	137
Average Sequence Length	88 residues
Representative Sequence	VAAFLFALLTHSPFRGGNRRVALASLFAFCELNNRTIDSRVLDEKTAETLFKRAAAHRELGIAPENVFREIREILTRAIVALQ
Number of Associated Samples	124
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.03 %
% of genes near scaffold ends (potentially truncated)	84.67 %
% of genes from short scaffolds (< 2000 bps)	86.13 %
Associated GOLD sequencing projects	114
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Most Common Taxonomy
Group	Bacteria (99.270 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (18.248 % of family members)
Environment Ontology (ENVO)	Unclassified (34.307 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.796 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.95% β-sheet: 5.41% Coil/Unstructured: 48.65%
Feature Viewer

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SCOP family	SCOP domain	Representative PDB	TM-score
a.121.1.1: Tetracyclin repressor-like, C-terminal domain	d3q0wa2	3q0w	0.61503
a.121.1.1: Tetracyclin repressor-like, C-terminal domain	d2hkua2	2hku	0.61261
a.126.1.0: automated matches	d6hn1a1	6hn1	0.6117
a.121.1.1: Tetracyclin repressor-like, C-terminal domain	d2hyja2	2hyj	0.59664
a.121.1.1: Tetracyclin repressor-like, C-terminal domain	d2iu5a2	2iu5	0.59044

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF01814	Hemerythrin	43.80
PF08291	Peptidase_M15_3	7.30
PF05951	Peptidase_M15_2	2.19
PF00113	Enolase_C	2.19
PF09413	DUF2007	1.46
PF00581	Rhodanese	1.46
PF04471	Mrr_cat	0.73
PF03091	CutA1	0.73
PF00092	VWA	0.73
PF04536	TPM_phosphatase	0.73
PF13248	zf-ribbon_3	0.73
PF03952	Enolase_N	0.73
PF00990	GGDEF	0.73
PF01464	SLT	0.73
PF00069	Pkinase	0.73
PF12225	DUF5981	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG0148	Enolase	Carbohydrate transport and metabolism [G]	2.92
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.92
COG3108	Uncharacterized conserved protein YcbK, DUF882 family	Function unknown [S]	2.19
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	0.73

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.27 %
Unclassified	root	N/A	0.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.27 %
Unclassified	root	N/A	0.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.27 %
Unclassified	root	N/A	0.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	29.93 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	4.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.46 %
Unclassified	root	N/A	0.73 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	29.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	4.38 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %
Unclassified	root	N/A	0.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.93 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	2.92 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.46 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.46 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.73 %
Unclassified	root	N/A	0.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.93 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	2.92 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.46 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.73 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.73 %
Unclassified	root	N/A	0.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.93 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2.92 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.46 %
Thioalkalivibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio	0.73 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.73 %
Unclassified	root	N/A	0.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.93 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	2.92 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.46 %
Intrasporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium	0.73 %
unclassified Thioalkalivibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → unclassified Thioalkalivibrio	0.73 %
Unclassified	root	N/A	0.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.93 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2.92 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.46 %
Intrasporangium oryzae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium oryzae	0.73 %
Thioalkalivibrio sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → unclassified Thioalkalivibrio → Thioalkalivibrio sp.	0.73 %
Unclassified	root	N/A	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_105027078	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300000956\|JGI10216J12902_111354693	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300001991\|JGI24743J22301_10087266	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300002568\|C688J35102_120428679	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300004153\|Ga0063455_100023734	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300004463\|Ga0063356_100114895	All Organisms → cellular organisms → Bacteria	2967	Open in IMG/M
3300004479\|Ga0062595_100821423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300005093\|Ga0062594_102025781	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300005167\|Ga0066672_10861841	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005171\|Ga0066677_10552349	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300005176\|Ga0066679_10791677	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300005177\|Ga0066690_10578428	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300005187\|Ga0066675_10484149	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300005293\|Ga0065715_11167670	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005338\|Ga0068868_101367536	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300005340\|Ga0070689_101467386	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300005343\|Ga0070687_100010545	All Organisms → cellular organisms → Bacteria	4002	Open in IMG/M
3300005355\|Ga0070671_100137085	All Organisms → cellular organisms → Bacteria	2063	Open in IMG/M
3300005364\|Ga0070673_100209068	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300005446\|Ga0066686_10648791	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300005450\|Ga0066682_10635666	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300005454\|Ga0066687_10571989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300005454\|Ga0066687_10704552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300005456\|Ga0070678_100847887	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300005459\|Ga0068867_102262987	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300005471\|Ga0070698_100506822	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1145	Open in IMG/M
3300005471\|Ga0070698_102072634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300005535\|Ga0070684_101108072	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300005546\|Ga0070696_100087874	All Organisms → cellular organisms → Bacteria	2208	Open in IMG/M
3300005549\|Ga0070704_100268314	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300005555\|Ga0066692_11001305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium oryzae	511	Open in IMG/M
3300005558\|Ga0066698_10799330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300005561\|Ga0066699_10547815	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300005564\|Ga0070664_101652748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300005566\|Ga0066693_10144366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	891	Open in IMG/M
3300005574\|Ga0066694_10346697	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300005575\|Ga0066702_10267850	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300005575\|Ga0066702_11002765	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300005576\|Ga0066708_10539061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300005577\|Ga0068857_102441901	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300005578\|Ga0068854_100042998	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3200	Open in IMG/M
3300005578\|Ga0068854_100119903	All Organisms → cellular organisms → Bacteria	1995	Open in IMG/M
3300005615\|Ga0070702_100668318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	788	Open in IMG/M
3300005840\|Ga0068870_10927741	Not Available	617	Open in IMG/M
3300005841\|Ga0068863_102294845	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300006028\|Ga0070717_11791337	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300006032\|Ga0066696_10328875	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300006032\|Ga0066696_10727744	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300006046\|Ga0066652_101107758	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300006046\|Ga0066652_101662504	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300006172\|Ga0075018_10553207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300006173\|Ga0070716_100142098	All Organisms → cellular organisms → Bacteria	1532	Open in IMG/M
3300006237\|Ga0097621_102380681	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300006358\|Ga0068871_102051587	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300006800\|Ga0066660_10413447	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300006844\|Ga0075428_100310455	All Organisms → cellular organisms → Bacteria	1695	Open in IMG/M
3300006854\|Ga0075425_100000173	All Organisms → cellular organisms → Bacteria	56492	Open in IMG/M
3300006854\|Ga0075425_100000604	All Organisms → cellular organisms → Bacteria	33973	Open in IMG/M
3300006871\|Ga0075434_100232073	All Organisms → cellular organisms → Bacteria	1865	Open in IMG/M
3300006871\|Ga0075434_101187716	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300006894\|Ga0079215_10144241	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300006903\|Ga0075426_10365293	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1062	Open in IMG/M
3300006914\|Ga0075436_100453790	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	934	Open in IMG/M
3300009012\|Ga0066710_101093131	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300009029\|Ga0066793_10081673	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1859	Open in IMG/M
3300009029\|Ga0066793_10695123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300009098\|Ga0105245_10175979	All Organisms → cellular organisms → Bacteria	2041	Open in IMG/M
3300009148\|Ga0105243_10200526	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1749	Open in IMG/M
3300010044\|Ga0126310_10416719	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300010301\|Ga0134070_10172096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300010303\|Ga0134082_10445520	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300010391\|Ga0136847_10732289	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300010399\|Ga0134127_13368259	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300010401\|Ga0134121_10654830	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	990	Open in IMG/M
3300011269\|Ga0137392_10575045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300011427\|Ga0137448_1115192	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300012010\|Ga0120118_1098129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300012189\|Ga0137388_11352670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300012204\|Ga0137374_10080246	All Organisms → cellular organisms → Bacteria	3164	Open in IMG/M
3300012209\|Ga0137379_11705967	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300012211\|Ga0137377_11920651	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300012353\|Ga0137367_10036059	All Organisms → cellular organisms → Bacteria	3794	Open in IMG/M
3300012358\|Ga0137368_10650388	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300012929\|Ga0137404_11239202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300013294\|Ga0120150_1095790	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300013296\|Ga0157374_10000008	All Organisms → cellular organisms → Bacteria	588863	Open in IMG/M
3300013308\|Ga0157375_13607445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300014487\|Ga0182000_10169664	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	808	Open in IMG/M
3300014745\|Ga0157377_10772677	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300014745\|Ga0157377_11248702	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300014823\|Ga0120170_1048122	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300015084\|Ga0167654_1015683	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1255	Open in IMG/M
3300015162\|Ga0167653_1003992	All Organisms → cellular organisms → Bacteria	3264	Open in IMG/M
3300015164\|Ga0167652_1029890	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300015199\|Ga0167647_1085232	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300015372\|Ga0132256_100909206	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300018074\|Ga0184640_10313434	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300018431\|Ga0066655_10320682	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300018466\|Ga0190268_11907108	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300018468\|Ga0066662_10065038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2409	Open in IMG/M
3300018482\|Ga0066669_11787885	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300020181\|Ga0196958_10178993	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300020215\|Ga0196963_10553930	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300021358\|Ga0213873_10000319	All Organisms → cellular organisms → Bacteria	8181	Open in IMG/M
3300021363\|Ga0193699_10023367	All Organisms → cellular organisms → Bacteria	2273	Open in IMG/M
3300022756\|Ga0222622_10685969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300024178\|Ga0247694_1009800	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300024182\|Ga0247669_1067386	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300024275\|Ga0247674_1002428	All Organisms → cellular organisms → Bacteria	2015	Open in IMG/M
3300025906\|Ga0207699_10286065	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300025918\|Ga0207662_10018396	All Organisms → cellular organisms → Bacteria	3965	Open in IMG/M
3300025918\|Ga0207662_11066783	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300025927\|Ga0207687_10253166	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300025928\|Ga0207700_10020191	All Organisms → cellular organisms → Bacteria	4518	Open in IMG/M
3300025939\|Ga0207665_10162282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → unclassified Thioalkalivibrio → Thioalkalivibrio sp.	1608	Open in IMG/M
3300025960\|Ga0207651_11238543	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300026023\|Ga0207677_11341488	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300026116\|Ga0207674_12196928	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300026312\|Ga0209153_1145443	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300026550\|Ga0209474_10053512	All Organisms → cellular organisms → Bacteria	2876	Open in IMG/M
3300027684\|Ga0209626_1179976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300027862\|Ga0209701_10183751	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300027886\|Ga0209486_10515796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	745	Open in IMG/M
3300027903\|Ga0209488_11005650	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300028744\|Ga0307318_10134131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	846	Open in IMG/M
3300030510\|Ga0268243_1022539	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1254	Open in IMG/M
3300031231\|Ga0170824_118279025	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300031366\|Ga0307506_10191377	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300031474\|Ga0170818_109744364	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300031720\|Ga0307469_11749400	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300031720\|Ga0307469_11898780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300031731\|Ga0307405_11153884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300031740\|Ga0307468_101563075	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300031908\|Ga0310900_11209038	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300031911\|Ga0307412_11456763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300032002\|Ga0307416_100704520	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1099	Open in IMG/M
3300034221\|Ga0334937_026111	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1542	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.26%
Host-Associated	Host-Associated	27.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.61%
Plants	Host-Associated → Plants	27.74%
Aquatic	Environmental → Aquatic	3.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.49%
Sediment	Environmental → Aquatic → Sediment	2.92%
Roots	Host-Associated → Plants → Roots	1.46%
Freshwater	Environmental → Aquatic → Freshwater	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.09%
Loam	Environmental → Terrestrial → Soil → Loam	13.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.14%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.03%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.46%
Sand	Environmental → Terrestrial → Soil → Sand	1.46%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.46%
Lake	Environmental → Aquatic → Freshwater → Lake	0.73%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.73%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.73%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.03%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.19%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.19%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.46%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.46%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.46%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.73%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.25%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.30%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.30%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.92%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.19%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.19%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.19%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.19%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.46%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.46%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.46%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.46%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.46%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.73%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.73%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.73%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.73%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.73%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013294	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300015084	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5a, rocky medial moraine)	Environmental	Open in IMG/M
3300015162	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015164	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015199	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2c, rock/snow interface)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020181	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10	Environmental	Open in IMG/M
3300020215	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024178	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300024275	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300034221	Biocrust microbial communities from Mojave Desert, California, United States - 33SMC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1050270781	3300000956	Soil	KPFRGGNRRVALASLIAFCELNHRSVDTRIFDEKAAETILRRAGSCRELGIPPENAFRELREVMNRAIIANQ*
JGI10216J12902_1113546933	3300000956	Soil	TAALVFALLQSRPFRGQNRRVALASLIAFCELNNKAIDTRILDEKTVETLLKRAASCRDLGIPPENVFRELRETLGRSIVNGPQQS*
JGI24743J22301_100872661	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	TFPDKVAAFLFALLINSPFRGGXRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
C688J35102_1204286792	3300002568	Soil	MLGREAYSTFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRMLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0063455_1000237341	3300004153	Soil	FRGGNRRVALASLFAFCEINNKSVDSRVLDEKTAENLLRRASSFRELGIPPENVFREMRETMSRAIVAAAPQRD*
Ga0063356_1001148953	3300004463	Arabidopsis Thaliana Rhizosphere	VTTLGREAYPSFADKVAAFLFALLTNSPFRGGNRRVALASLFAFCEINDKTIDSRVLDEKTVETLLKRAAGHRDLGIPPENVFREIREALSRAIVAS*
Ga0062595_1008214232	3300004479	Soil	LQAKPFRGGNRRVALASLIAFCELNHRSVDTRVFDEKAAETILRRAGSCRELGIPPENAFRELREAMNRAIVASQ*
Ga0062594_1020257811	3300005093	Soil	VFALLQARPFRGGNRRVALASLVAFCELNNRSVDSRIFDEKTAETLLKRAAGYRELGIPPENVFSELRELMTRAIVATQ*
Ga0066672_108618411	3300005167	Soil	VTMLGHEAYPIFSDKVAAFVFALLQARPFRGGNRRVALASIFAFAELNNRSVDSRVLDEKTAENIVKRAAGHREMGIAPENVYAELREVMRRAIVSS*
Ga0066677_105523492	3300005171	Soil	KVAAFLFALLTYSPFRGGNRRVALAALFAFCELNNRTVDSRVLDEKSAETLFRRAAAHREMGIPPENVYREIRETLSRAIVPLPS*
Ga0066679_107916772	3300005176	Soil	TTLGREAYPSFPDKVAALLFALLTNSPFRGGNRRVALASLFAFCELNNRTIDSRVLDEKTAETLFKRAANHRELGIAPENVFREIREILGRAIVAQ*
Ga0066690_105784282	3300005177	Soil	AALLFALLTNSPFRGGNRRVALASLFAFCELNNRTIDSRVLDEKTAETLFKRAANHRELGIAPENVFREIREILGRAIVAQQ*
Ga0066675_104841491	3300005187	Soil	DKVAAFLFALLTHSPFQGGNRRVALAALFAFCELNKRTIDSRVLDEKTAETLFKRASAHRELGIPPENVFREIREIMSRAIVSQQ*
Ga0065715_111676702	3300005293	Miscanthus Rhizosphere	PFRGGNRRVALASLFAFCEINNKSVDSRVLDEKTAENLLRRASSFRELNIPPENVFREMRETMSKAIVAAA*
Ga0068868_1013675362	3300005338	Miscanthus Rhizosphere	FQSFSDKVAAFVFALLQAKPFRGGNRRVALASIFAFCELNNRSIDTRVLDEKTAETLLKRAAAHQEMGLAPENVLREIRETFQRAIVQAA*
Ga0070689_1014673862	3300005340	Switchgrass Rhizosphere	VQRPQVTTLGREAYPSFSEKVAAFLFALLTYSPFRGGNRRVALASLFAFCELNNRLVDSRVLDEKTAETLLKRAAAHREMGIPPENVYREMREVLNRAIITPS*
Ga0070687_1000105454	3300005343	Switchgrass Rhizosphere	VQRPQVTTLGREAYPAFADKVAALVFALLQTRPFRGGNRRVALASLVAFCELNQRAIDGRIFDEKTAETILRRAGNCRELGIPPENAFRELRDVMTRSIVAAG*
Ga0070671_1001370851	3300005355	Switchgrass Rhizosphere	LQAKPFRGGNRRVALASIFAFCELNNRSIDTRVLDEKTAETLLKRAAAHQEMGLAPENVLREIRETFQRAIVQAA*
Ga0070673_1002090684	3300005364	Switchgrass Rhizosphere	DKVAAFLFALLSNRPFRGGNRRVALASLFAMCELNNRTLDTRIVDEKTAENLIKRVAAFRELGIPPENVFREIRETLGRAIVSI*
Ga0066686_106487912	3300005446	Soil	VAAFLFALLTHSPFHGGNRRVALAALFAFCELNKRTIDSRVLDEKTAETLFKRASAHRELGIPPENVFREIREIMSRAIVSQQ*
Ga0066682_106356661	3300005450	Soil	LGREAYPSFPDKVAAFLFALLTNSPFRGGNRRVALASLFAFCELNNKTIDGRVFDEKTAETLFKRAAGYRELGIAPENVFREIREILSRAIVTLQ*
Ga0066687_105719891	3300005454	Soil	LTYSPFRGGNRRVALAALFAFCELNNRTVDSRVLDEKSAETLFRRAAAHREMGIPPENVYREIREMLSRAIVPLPS*
Ga0066687_107045521	3300005454	Soil	LFALLTHSPFRGGNRRVALASLFAFCELNNRTIDARVLDEKTAETLFKRAAAHRELGIAPENVFREIREILNRAIVALPS*
Ga0070678_1008478872	3300005456	Miscanthus Rhizosphere	VTIMGREAFQSFSDKVAAFVFALLQAKPFRGGNRRVALASIFAFCELNNRSIDTRVLDEKTAETLLKRAAAHQEMGLAPENVLREIRETFQRAIVQAA*
Ga0068867_1022629871	3300005459	Miscanthus Rhizosphere	TLGREAYPTFPEKVAAFVFALLSYRPFRGGNRRLALASIVAFCELNNRTLDARVFDEKTAEGVIRRVASHRENGVAPENAFREIKETLMRAIVAQ*
Ga0070698_1005068221	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	PFRGGNRRVALAALFAFCELNNRTVDSRVLDEKGAETLFRRAAAHREMGIPPENVYREIRETLTRAIVPLPS*
Ga0070698_1020726341	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	RGGNRRVALASLFAFCELNNRTVDARLLDEKAAENLFKRAAAHRELGIPPENVFREIRETMTRAIMPLS*
Ga0070684_1011080721	3300005535	Corn Rhizosphere	FPEKVAAFIFALLQNRPFRGGNRRVALASLFAFCEINNKAVDARVLDEKTAENLLRRASSFRELGIPPENVFREMRETMSRAIVTGTSS*
Ga0070696_1000878744	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	TLGREAYPSFPEKVAAFLFALLTYSPFRGGNRRVALAALFAFCELNNRTIDSRMLDEKGAETLFRRAAAYREMGIPPENVYKEIRETLSRAIVPLPS*
Ga0070704_1002683141	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LQSKPFRGGNRRVALASLVAFCELNNRTIDTRVFDEKAAETLLKRAGSCQELGIPPENVFRELRDAMNRAITAHH*
Ga0066692_110013051	3300005555	Soil	VNAVQRPQVTTLGREAYPSFPEKVAAFLFALLTYSPFRGGNRRVALAALFAFCELNNRTVDSRVLDEKGAETLFRRAAAHREMGIPPENVYREIRETLSRAIVPLPS*
Ga0066698_107993301	3300005558	Soil	VAAFLFALLTHSPFRGGNRRVALASLFAFCELNNRTIDSRVLDEKTAETLFKRAAAHRELGIAPENVFREIREILTRAIVALQ*
Ga0066699_105478152	3300005561	Soil	FALLTHSPFQGGNRRVALAALFAFCELNKRTIDSRVLDEKTAETLFKRASAHRELGIPPENVFREIREIMSRAIVSQQ*
Ga0070664_1016527481	3300005564	Corn Rhizosphere	FRGGNRRVALASLFAFCELNNRTVDSRVLDEKTAETLFKRAAAHREMGIPPESVYREIRETLNRAIVAQ*
Ga0066693_101443661	3300005566	Soil	VFALLQARPFRGGNRRVALASIFAFAELNNRNIDARVLDEKTAETIVKRAAGYREMNLQPENVFAELREVMRRAITASSPS*
Ga0066694_103466972	3300005574	Soil	FSDKVAAFVFALLQARPFRGGNRRVALASIFAFAELNNRNIDARVLDEKTAETIVKRAAGYREMNLQPENVFAELREVMRRAITASSPS*
Ga0066702_102678503	3300005575	Soil	AVQRPQVTMLGREAYATFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAETLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0066702_110027652	3300005575	Soil	TNSPFRGGNRRVALASLFAFCELNNRTIDSRVLDEKTAETLFKRAAAHREMGIAPENVFREIREILVRAIVAV*
Ga0066708_105390611	3300005576	Soil	RGGNRRVALASIFAFAELNNRNIDARVLDEKTAETIVKRAAGYREMNLQPENVFAELREVMRRAITASSPS*
Ga0068857_1024419012	3300005577	Corn Rhizosphere	REAYPGFADKVAAFVFALLQARPFRGGNRRVALASLVAFCELNNRTVDTRIFDEKTAENLLKRAANYHELGVPPENVFRELREVMTRAIVANQ*
Ga0068854_1000429983	3300005578	Corn Rhizosphere	MLGREAYSTFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0068854_1001199033	3300005578	Corn Rhizosphere	MLGREAYATFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRMLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0070702_1006683182	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MGREAFQSFSDKVAAFVFALLQAKPFRGGNRRVALASIFAFCELNNRSIDTRVLDEKTAETLLKRAAAHQEMGLAPENV
Ga0068870_109277412	3300005840	Miscanthus Rhizosphere	ALLQARPFRGGNRRVALASLLAFCELNNKVVDSRIFDEKTAETLLKRAAACREMGIPPENVFRELKDTLNKSIVGG*
Ga0068863_1022948451	3300005841	Switchgrass Rhizosphere	YPTFPEKVAAFVFALLQNRPFRGGNRRVALASLFAFCEINNKAVDSRVLDEKTAENLLRRASSFRELGIPPENVFREMRETMSRAIVAAAS*
Ga0070717_117913371	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TYSPFRGGNRRVALASLFAFCELNNRGIDTRVLDEKSAETLFRRAASYRDMGIPPENVFREIREVLARAIVPMQG*
Ga0066696_103288751	3300006032	Soil	EKVAAFLFALLTYSPFRGGNRRVALAALFAFCELNNRTVDSRVLDEKSAETLFRRAAAHREMGIPPENVYREIREMLSRAIVPLPS*
Ga0066696_107277442	3300006032	Soil	PQVTMLGREAYATFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAETLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0066652_1011077581	3300006046	Soil	LGREAYPTFPEKVAAFLFALLTYSPFRGGNRRVALASLFAFCELNKRTIDSRVLDEKTAETLFKRASAHRELGIPPENVFREIREIMSRAIVSQQ*
Ga0066652_1016625042	3300006046	Soil	LGREAYPSFPEKVAAFLFALLTYSPFRGGNRRVALASLFAFCELNNRTVDSRVLDEKGAETLFRRAAAHREMGIPPENVYREIRETLSRAIVPLPS*
Ga0075018_105532071	3300006172	Watersheds	FRGGNRRVALASIFAFCELNNRAVDSRTFDEKTAESIVRRAASYRELGLPPENVFREIRETLSRAIVVEK*
Ga0070716_1001420983	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MMLGREAYPIFSDKVAAFVFALLQARPFRGGNRRVALASIFAFAELNNRNVDSRVLDEKTAENIVKRAAAHREMGLAPENVFAELREVMRRAIVDAQ*
Ga0097621_1023806811	3300006237	Miscanthus Rhizosphere	ALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0068871_1020515872	3300006358	Miscanthus Rhizosphere	PQVTIMGREAFQSFSDKVAAFVFALLQAKPFRGGNRRVALASIFAFCELNNRSIDTRVLDEKTAETLLKRAAAHQEMGLAPENVLREIRETFQRAIVQAA*
Ga0066660_104134473	3300006800	Soil	PFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAETLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0075428_1003104554	3300006844	Populus Rhizosphere	AAAFIFALLQARPFRGGNRRVALASLLAFCELNNRSVDARVFDEKTAETLLRRAGGYREMGIPPENIFRELKETLTRSIQ*
Ga0075425_10000017317	3300006854	Populus Rhizosphere	VQARPFRGQNRRVALASLFAFCELNNRTVDSRVFDEKTAENILKRAGSYLELGLAPENVFRELRELMNRAITTQG*
Ga0075425_10000060432	3300006854	Populus Rhizosphere	MMLGREAYPIFSDKVAAFVFALLQARPFRGGNRRVALASIFAFAELNNRNVDSRVLDEKTAENIVKRAAGHREMGLAPENVFAELREVMRRAIVDAP*
Ga0075434_1002320731	3300006871	Populus Rhizosphere	EFPDKVAAFLFALLSNRPFRGGNRRVALASLFAMCELNNRTVDTRIIDEKTAETLIKRVAAFRELGIPPENVFREIRETLGRAIVAV*
Ga0075434_1011877161	3300006871	Populus Rhizosphere	MLGREAYPIFSDKVAAFVFALLQARPFRGGNRRVALASIFAFAELNNRNVDSRVLDEKTAENVVKRAAAHREMGLAPENVFAELREVMRRAIVEG*
Ga0079215_101442413	3300006894	Agricultural Soil	VQRPQITTLGREAYATFPEKVSAFIFALLSYRPFRGGNRRLALASLFAFVQINNRAIDTRVFDEKTAETLFKKAAGHREMGIPPETIFREFREMMNRAIVAA*
Ga0075426_103652932	3300006903	Populus Rhizosphere	VQRPQITTLGREAYPSFPDKVAAFLFALLTHSPFRGGNRRVALASLFAFCELNNRTIDSRVLDEKTAETLFKRAAGHRELGIPPENVFREIREVLGRAIVAQQ*
Ga0075436_1004537901	3300006914	Populus Rhizosphere	FPEKVAAFIFALLTYSPFRGGNRRVALASLFAFCELNRRTVDSRVLDEKTAETLFKRAAAHREMGIPPENVYREMRETLNRAIVTAS*
Ga0066710_1010931313	3300009012	Grasslands Soil	FALLTHSPFRGGNRRVALASLFAFCELNNRTIDSRVLDEKTAETLFKRAAAHREMGIAPENVFREIREILVRAIVAV
Ga0066793_100816733	3300009029	Prmafrost Soil	VQRPQVTTLGHEAYPLFADKVAAFVFALLQARPFHGGNRRVALASIFAFCEMNERSIDTRVLDEKTAENVLKRAAGHRELGIPPETVFAELREAMRRAISAPR*
Ga0066793_106951232	3300009029	Prmafrost Soil	KVSAFVFALLSYRPFHGGNRRLAFASMFAFVEINNRSIDSRVLDEKSAESLFKRAAGHRELGIPPENVFREFREMMTRAIVASSSS*
Ga0105245_101759794	3300009098	Miscanthus Rhizosphere	INAVQRPQVMMLGREAYPLFSDKVAAFVFALLQARPFRGGNRRVALASIFAFAELNNRAVDSRVLDEKTAENVVKRAAAHREMGIAPENVFAELREVMRKAIVNASQ*
Ga0105243_102005261	3300009148	Miscanthus Rhizosphere	KVAAFLFALLINSPFRGGNRRVALASLFAFCELNSRTVDSRILDEKSAEGLFKRAAGHRELGIPPENVFREIREMMTRAIVPLS*
Ga0126310_104167191	3300010044	Serpentine Soil	REAYPSFSDKVAAFVFALLQSRPFRGGNRRLALASMFAFCELNNRAIDSRIFDEKTAENIVRRAASYREMGIPPENVFREFRELMTRAIVASS*
Ga0134070_101720961	3300010301	Grasslands Soil	SPFRGGNRRVALASLFAFCELNNRTVDSRVLDEKTAETLFKRAAAHREMGIPPENVYREMRETLNRAIVAS*
Ga0134082_104455201	3300010303	Grasslands Soil	PEKVAAFLFALLTYSPFRGGNRRVALAALFAFCELNNRTVDSRVLDEKSAETLFRRAAAHREMGIPPENVYREIRETLSRAIVPLPS*
Ga0136847_107322891	3300010391	Freshwater Sediment	QARPFRGGNRRLALASMFAFCEVNHRAIDSRIFDEKTAETILRRAAAYREMGIPPENVFREFRELMTRAIAV*
Ga0134127_133682591	3300010399	Terrestrial Soil	AFIFALLTYSPFRGGNRRVALASLFAFCELNNRTVDSRVLDEKTAETLFKRAAAHREMGIPPENVYREMREVLNRAIVAS*
Ga0134121_106548303	3300010401	Terrestrial Soil	GREAYPVFSDKIAAFVFALLQARPFRGGNRRVALASIFAFAELNNRAVDARVLDEKTAENVVKRAAAHQEMGLAPENVFAELREVMRRAIVNA*
Ga0137392_105750451	3300011269	Vadose Zone Soil	VTMLGREAYPVFSDKVAAFVFALLQARPFRGGNRRVALASIFAFAELNNRAVDSRVLDEKTAETLVKRAAGHRELGIPPENVFREIREILGRAIVGQQ*
Ga0137448_11151921	3300011427	Soil	PEKVAAFLFALLTYSPFCGGNRRVALASLFAFCELNNRTVDSRVLDEKSAETLLKRAAAHREMGIPPENVYREIRETLNRAIVAQSG*
Ga0120118_10981292	3300012010	Permafrost	GNRRVALAALIAFCEVNNRTMDSRVFDEKAAETMVKRASSHQEMGIPPENVFRDIRELLSRAISAPSS*
Ga0137388_113526701	3300012189	Vadose Zone Soil	KVAAFLFALLTHSPFRGGNRRVALASLFAFCELNNRTIDTRVFDEKTAETLFKRAAAYRELGIAPENVFREIREILGRAIVGQQ*
Ga0137374_100802461	3300012204	Vadose Zone Soil	NAVQRPQVTTLGREAYPSFPEKVAAFLFALLTYSPFRGGNRRVALAALFAFCELNNRTVDSRVLDEKGAETLFRRAAAHREMGIPPENVYREIRETLSRAIVPLPS*
Ga0137379_117059671	3300012209	Vadose Zone Soil	VTTLGREAYPSFPDKVAAFLFALLTHSPFRGGNRRVALASLFAFCELNNRTIDSRVLDEKTAETLFKRAAAHREMGIPPENVFREIREILVRAIVAI*
Ga0137377_119206512	3300012211	Vadose Zone Soil	PQVTTLGREAYPSFPDKVAAFLFALLTHSPFRGGNRRVALASLFAFCELNNRTIDSRVLDEKTAETLFKRAAAHRDLGIAPENVFREIREVLGRAIVAQQS*
Ga0137367_100360596	3300012353	Vadose Zone Soil	ITTLGREAYPSFPDKVAAFLFALLTHAPFQGGNRRVALASLFAFCELNNRTIDSRVLDEKTAETLFKRAAGHRELGIAPENVFREIREILGRAIVVQQ*
Ga0137368_106503882	3300012358	Vadose Zone Soil	PDKVAAFVFALLSYRPFRGGNRRLALASMFAFCEINNRTIDSRVLDEKTAETLFKRAAGHREMGIPPENVFREFREMMTRAIVSAS*
Ga0137404_112392022	3300012929	Vadose Zone Soil	MMLGREAYATFPDKVAAFLFALLINSPFRGGNRRVALASLFAFCELNHRAVDSRILDEKTAESLFKRVAGHRELGIPPENVFREIRETMSRA
Ga0120150_10957901	3300013294	Permafrost	FALIQNNPFRAGNRRVALAALIAFCEVNNRTMDSRVFDEKAAETMVKRASSHQEMGIPPENVFRDIRELLSRAISAPSS*
Ga0157374_10000008539	3300013296	Miscanthus Rhizosphere	VQRPQVTMLGREAYATFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRMLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0157375_136074452	3300013308	Miscanthus Rhizosphere	FALLQNRPFRGGNRRVALASLFAFCEINNKAVDARVLDEKTAENLLRRASSFRELGIPPENVFREMRETMSRAIVTGTSS*
Ga0182000_101696641	3300014487	Soil	EAYPSFSDKVAAFVFALVQARPFRGGNRRVALASLVAFCELNNRNVDTRIFDEKTAETLLKRAATCRDIGIPPENVFRELREVLSRSIVAQ*
Ga0157377_107726771	3300014745	Miscanthus Rhizosphere	RPFRGGNRRVALASLIAFCELNNRSVDTRVFDEKAAENILKRAGSCRELGIPPENAFRELRDAMTRAIVANA*
Ga0157377_112487021	3300014745	Miscanthus Rhizosphere	FRGGNRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0120170_10481222	3300014823	Permafrost	PFRAGNRRVALAALIAFCEVNNRTMDSRVFDEKAAETMVKRASSHQEMGIPPENVFRDIRELLSRAISAPSS*
Ga0167654_10156831	3300015084	Glacier Forefield Soil	VAAFVFALLQARPFRGGNRRVALASIFAFCDINNRIVDSRVLDEKAAETLVKRASGYRELGVPAEIAFREIRETLGRAILPG*
Ga0167653_10039924	3300015162	Glacier Forefield Soil	VQRPQVTMLGREAYATFSDKVAAFLFALLINSPFKGGNRRVALASLFAFCEVNNRTVDSRMLDEKAAENLFKRVAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0167652_10298902	3300015164	Glacier Forefield Soil	MLGREAYAAFPDKVAAFLFALLINSPFRGGNRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*
Ga0167647_10852321	3300015199	Glacier Forefield Soil	RPQVMMLGREAYATFPDKVAAFLFALLINSPFRGGNRRVALASLFAFCELNNRAVDTRILDEKTAENLFKRAAGHRELGIPPENVFREIRETMARAVMPAA*
Ga0132256_1009092063	3300015372	Arabidopsis Rhizosphere	VQRPQVTIMGREAFPSFSDKVAYFVFALLQAKPFRGGNRRVALASIFAFCELNNRSIDTRVLDEKTAETLLKRAAAHQEMGLSAENVLREIRETFQRAIVQG
Ga0184640_103134342	3300018074	Groundwater Sediment	FVFALLSYRPFRGGNRRLALASLFAFCEVNNRNVDSRVFDEKTAETMFKRAALHREMGIPPENVFREFRELMTRAISGT
Ga0066655_103206822	3300018431	Grasslands Soil	MLGREAYSTFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDARMLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS
Ga0190268_119071081	3300018466	Soil	LLQTRPFRGGNRRVALASLIAFCELNNRGVDSRVFDEKAAENILKRAGSCQELGIPPENAFRELRDVMNRAIVAQ
Ga0066662_100650384	3300018468	Grasslands Soil	AFVFALLQARPFRGGNRRVALASIFAFAELNNRSVDARVLDEKTAENVVKRAAAHREMGIAPENVFAELREVMRRAIVEA
Ga0066669_117878851	3300018482	Grasslands Soil	RPFRGGNRRVALASIFAFAELNNRAVDARVLDEKTAENVVKRAAAHREMGIAPESVFAELREVMRRAIVDA
Ga0196958_101789932	3300020181	Soil	AYPNFPDKVAALAFALLQTRPFRGGNRRVALASILAFCELNNRSVDSRIFDEKAAESIIKRAANCREAGIPPENVFRELRDVMNRAIVAGAQ
Ga0196963_105539302	3300020215	Soil	AAFIFALLQARPFRGGNRRVALASLLAFCELNNKTVDTRIFDEKTAETLLKRAAACRELGIPPENVFRELKDTLNKSIIVL
Ga0213873_100003198	3300021358	Rhizosphere	MLGREAYATFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRMLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS
Ga0193699_100233674	3300021363	Soil	VQRPQVMMLGREAYATFPDKVAAFLFALLMNSPFRGGNRRVALASMFAFCELNNKDVDARLLDENAAENLFKRVAGHRELGIPPENVFREIREAMTRAIVPLP
Ga0222622_106859691	3300022756	Groundwater Sediment	AFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS
Ga0247694_10098001	3300024178	Soil	PFRGGNRRVALASLFAFCELNSRTVDSRILDEKAAEGLFKRAAGHRELGIPPENVFREIREMMTRAIVPLS
Ga0247669_10673862	3300024182	Soil	QRPQVTMLGREAYATFPDKVAAFLFALLINSPFRGGNRRVALASLFAFCELNSRTVDSRILDEKAAEGLFKRAAGHRELGIPPENVFREIREMMTRAIVPLS
Ga0247674_10024281	3300024275	Soil	RPQVTMLGREAYATFPDKVAAFLFALLINSPFRGGNRRVALASLFAFCELNSRTVDSRILDEKAAEGLFKRAAGHRELGIPPENVFREIREMMTRAIVPLS
Ga0207699_102860651	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VAAFVFALLQAHPFHGGNRRVALASIFAFTELNNRTVDSRVLDEKTAENVIKRASGHREMGLPPENVFAELREVMRRAIA
Ga0207662_100183963	3300025918	Switchgrass Rhizosphere	VQRPQVTTLGREAYPAFADKVAALVFALLQTRPFRGGNRRVALASLVAFCELNQRAIDGRIFDEKTAETILRRAGNCRELGIPPENAFRELRDVMTRSIVAAG
Ga0207662_110667831	3300025918	Switchgrass Rhizosphere	PEKVAAFLFALLTYSPFRGGNRRVALASLFAFCELNNRTIDSRILDEKGAETLFRRATAYREMGIPAENVYKEIRETLSRAIVPLPS
Ga0207687_102531661	3300025927	Miscanthus Rhizosphere	INAVQRPQVMMLGREAYPLFSDKVAAFVFALLQARPFRGGNRRVALASIFAFAELNNRAVDSRVLDEKTAENVVKRAAAHREMGIAPENVFAELREVMRKAIVNASQ
Ga0207700_100201916	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LGREAYPSFPEKVAAFLFALLTYSPFRGGNRRVALAALFAFCELNNRTVDSRVLDEKTAETLLRRAAAHREMGIPPENVYREIRETLSRAIVPLPA
Ga0207665_101622823	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MLGREAYPIFSDKVAAFVFALLQARPFRGGNRRVALASIFAFAELNNRNVDSRVLDEKTAENIVKRAAAHREMGLAPENVFAELREVMRRAIVDAQ
Ga0207651_112385431	3300025960	Switchgrass Rhizosphere	TLGREAYREFADKVAAFLFALLSNRPFRGGNRRVALASLFAMCELNNRTLDTRIVDEKTAENLIKRVAAFRELGIPPENVFREIRETLGRAIVSI
Ga0207677_113414881	3300026023	Miscanthus Rhizosphere	FQSFSDKVAAFVFALLQAKPFRGGNRRVALASIFAFCELNNRSIDTRVLDEKTAETLLKRAAAHQEMGLAPENVLREIRETFQRAIVQAA
Ga0207674_121969282	3300026116	Corn Rhizosphere	GREAYPGFADKVAAFVFALLQARPFRGGNRRVALASLVAFCELNNRTVDTRIFDEKTAENLLKRAANYHELGVPPENVFRELREVMTRAIVANQ
Ga0209153_11454432	3300026312	Soil	PQVTMLGREAYPIFSDKVAAFVFALLQARPFRGGNRRVALASLIALCELNNRALDARVFDEKTAENLFKRAAGYRELGIPPENVYREMRETLTRAIVTQ
Ga0209474_100535121	3300026550	Soil	QRPQVTMLGREAYATFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAETLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS
Ga0209626_11799762	3300027684	Forest Soil	PDKVAAFLFALLTHSPFQGGNRRVALAALFAFCELNKRTIDSRVLDEKTAETLFKRASAHRELGIPPENVFREIREIMNRAIVAQQ
Ga0209701_101837513	3300027862	Vadose Zone Soil	FPEKVAAFVFALLQNSPFKGGNRRVALASLFAFCELNNRTIDTRVMDEKAAENLLKRAAGHREMGIPPENVFREVREMMGRAIVAHAT
Ga0209486_105157962	3300027886	Agricultural Soil	LVFALLMSRPFRGQNKRVALATLVAFCELNNRAVDSRMFDEKTAENLLKRAASCRELGIPPENVFRELREILTRSIVAAQ
Ga0209488_110056501	3300027903	Vadose Zone Soil	VMMLGREAYATFPDKVAAFLFALLMNSPFRGGNRRVALASLFAFCELNNRDVDTRLLDEKAAENLFKRVAGHRELGIPPENVFREIRETMTRVIVAS
Ga0307318_101341312	3300028744	Soil	LGREAYPTFPEKVAAFLFALLTYSPFRGGNRRVALASLFAFCELNNRTVDSRVLDEKTAETLFKRAAGHREMGIPPESVYREIRETLNRAIVAQS
Ga0268243_10225392	3300030510	Soil	VQRPQVTTLGREAYPSFSDKVAAFVFALVQARPFRGGNRRVALASLVAFCELNNRNVDTRIFDEKTAETLLKRAATCRDIGIPPENVFRELREVLSRSIVAQ
Ga0170824_1182790252	3300031231	Forest Soil	VTMLGREAYATFPDKVAAFLFALLINSPFRGGNRRVALASLFAFCELNSRTVDSRILDEKAADGLFKRAAGHRELGIPPENVFREIREMMTRAIVPLS
Ga0307506_101913772	3300031366	Soil	EAYATFPDKVAAFLFALLMNSPFRGGNRRVALASLFAFCELNNRDIDTRLLDEKAAENLFKRVAGHRELGIPPENVFREIREAMTRVIVGL
Ga0170818_1097443641	3300031474	Forest Soil	TFPEKVAAFLFALLINSPFRGGNRRVALASLFAFCELNSCTVDSRVLDEKAAEGLFKRAAGHRELGIPPENVFREIREMMTRAIVPIS
Ga0307469_117494002	3300031720	Hardwood Forest Soil	TMLGREAYSTFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHREMGIPPENVFREIREAMTRAIMPLS
Ga0307469_118987801	3300031720	Hardwood Forest Soil	FSDKVAAFVFALLQARPFRGGNRRVALASIFAFAELNNRAVDGRVLDEKTAENIVKRAAGHREMGIAPESVYAELREVMRRAIVNG
Ga0307405_111538842	3300031731	Rhizosphere	AAALVFALLQSRPFRGQNRRVALASLIAFCDLNNRSIDSRIFDEKTAETLLKRAGSFRELGIPPENVFRELRETLNRAIVAGASS
Ga0307468_1015630751	3300031740	Hardwood Forest Soil	VQRPQITTLGREAYPGFADKVAAFIFALLQARPFRGGNRRVALASLLAFCELNNKTVDARIFDEKTAETLLKRATAYREMGIPPENVFRELKDALNKSIVAGT
Ga0310900_112090382	3300031908	Soil	VAARVFALLQSRPFRGGNRRVALASLMAFCALNQKAVDSRIFDEKTAETILRRAGSCRELGIPPENAFRELRDVMNRAIVAA
Ga0307412_114567631	3300031911	Rhizosphere	LQSRPFRGQNRRVALASLIAFCDLNNRSIDSRIFDEKTAETLLKRAGSFRELGIPPENVFRELRETLNRAIVAGASS
Ga0307416_1007045203	3300032002	Rhizosphere	LLSYRPFRGGNRRLALASLFAFCELNNKTIDSRVFDEKTAETIFKRAASHRELGIPPENVFREFRELMNRAIA
Ga0334937_026111_1324_1542	3300034221	Biocrust	PFRGGNRRVALASLVAFCELNQRAIDTRIFDEKTAENILRRAATCREQGVPPENVFRELRDVMNRSIITPAR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F056859

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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