NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136641_1000004

Scaffold Ga0136641_1000004


Overview

Basic Information
Taxon OID3300013286 Open in IMG/M
Scaffold IDGa0136641_1000004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105823
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (71.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location NameUSA: Elizabeth Lake, Yosemite National Park, California, USA
CoordinatesLat. (o)37.8453Long. (o)-119.3697Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003080Metagenome / Metatranscriptome508Y
F019762Metagenome / Metatranscriptome228Y
F076100Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0136641_100000456F019762AGGAGMKLHESVAQSRYKMTIKESEGFRLRLEKHEVLSPKGLYSVDLINEMLKADGTIQDSSTYNFFMTREELQTLAYGLTA*
Ga0136641_100000461F076100AGGAGMRYITNKFDSIRLPVESGLLEWLQAQYPASKYYIKEN*
Ga0136641_100000463F003080GGAGMTTAKEMTDNLIYRAKNIQEFVVNRSMPDIPTGLVKFSFQHTAGEKYARIFVPALTQEEAESMVDQWFRENV*

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