Scaffold Ga0136642_1000470

Overview

Basic Information

• Taxon OID: 3300013285
• Scaffold ID: Ga0136642_1000470
• Source Dataset Name: Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21361
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (72.55%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Lower Cathedral Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.4233

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000684	Metagenome / Metatranscriptome	938	Y
F045504	Metagenome	152	Y
F074868	Metagenome / Metatranscriptome	119	Y
F079977	Metagenome	115	Y
F095359	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_100047011	F045504	GGA	MNKISDLCHNIFYKIDEDSDLCHIYTDNHYFMIPISGLDNLRYGLEAHYKQTELLFGFSDEELTILQKKRPRRSFIEEIDYQIDRKLYNGKVIQASDLISRLPFSSQSRNRNGKQNIADKRWRDALKSENPDVLRLVEWYEEEESYIRTKFPNVNWMKGTFAISPCHIYPAKKDRGEDSWTPDKILRDISLVNKVFDKISSSDLQGKHATNATEAHIAIDYLDQFEWDTLSVSRQALYVLLFRRIVQNFYDEYKITDIDLDI*
Ga0136642_100047017	F000447	GGAG	MGYIEIFRITDEGAGWVDLSKATPEEKLDLEIGLFQEGAL*
Ga0136642_100047020	F000684	N/A	MTLSGYTYQVGDLFTTSKTGVTGRINGFSPISNKVTRVGLTLANGSRRFAMVKTSK*
Ga0136642_100047022	F074868	AGGTGG	MTTLNKINIGKALQISGALENRIIHDVNNGGAKSTYGLDFGQRKMLIKFIFSANFPKCECVWCI*
Ga0136642_100047024	F095359	N/A	MNKNTIKFGGLGQEISCYCPVCSRKMTHWAVATLGTGSTMKYEWKCEPCELSLKSDQNGYAHLLTEMEYYK*
Ga0136642_100047029	F000447	AGCAG	MGFIEFARIDENGVEWVDLSNATPAEKLNIEIALFQEGAL*
Ga0136642_100047036	F079977	GGAG	MNRSVEEILMQWYPDGDFTEEDLWDAIAEANDVDVNEIMDQDILEFI*