Scaffold Ga0136642_1000016

Overview

Basic Information

• Taxon OID: 3300013285
• Scaffold ID: Ga0136642_1000016
• Source Dataset Name: Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117351
• Total Scaffold Genes: 213
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 139 (65.26%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Lower Cathedral Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.4233

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018683	Metagenome / Metatranscriptome	233	Y
F024289	Metagenome / Metatranscriptome	206	Y
F026269	Metagenome	198	Y
F049634	Metagenome	146	Y
F065781	Metagenome / Metatranscriptome	127	Y
F066582	Metagenome	126	Y
F078714	Metagenome / Metatranscriptome	116	Y
F099158	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_100001612	F026269	GGAG	MRYLLITFLRKPGGQIDEQVAMSKRVKTTDIQTCNVILDYVKKNVDKCVIEGNKVDTDWNRMNEYYRKIYPTMIAQLEKEALITAKVKK*
Ga0136642_1000016121	F018683	AGGA	MLVIKRFKQTQKFRVIVGQACFYATVKQIRNGVGDFMKCNAATQKALDALEGIRSGIGAADQCTSGLGGTWEGLQVQLNIA*
Ga0136642_1000016122	F024289	AGGA	MQALTERQKTLIVNNVVKAVKNIDNLSKTGYNFLYLCNGFIAHYDIYGFISTYSDGTLEQDILSYAGQNQWKNFRPGERDYEYYMAKADVYNRILAEIA*
Ga0136642_1000016127	F066582	GGAG	MNEHYKRLEDGPMDEIDAAVWSGDLFHNRANIAAFRAMMARWERGLKEAEDIVTEMEKEK
Ga0136642_1000016128	F065781	GGAG	MSEVDRAGWWAVVYLLMIGATAYFTIFMIVFGFVKKLFWS*
Ga0136642_1000016202	F099158	GAG	MIIEDLEYIFKPQLDEGTTKLYFMLIDGEHKLIERHLANDVATLLPMLDSFQYAGTVERIPRFIK*
Ga0136642_100001637	F078714	N/A	MKKQILSFIVQAPKTRAHYALFAENTPFKPKVVAPKNKYQRKPKHCKTDDQ*
Ga0136642_100001663	F049634	GAG	VKYYIANKAGTVFLPYEEGMIEWLQENYPHSEYKIIEVES*