Scaffold Ga0119915_103964

Overview

Basic Information

• Taxon OID: 3300013280
• Scaffold ID: Ga0119915_103964
• Source Dataset Name: Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V90903
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: California Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1004
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Activated Sludge → Activated Sludge Bacterial And Viral Communities From Ebpr Bioreactors In Australia

Source Dataset Sampling Location

• Location Name: Australia: Queensland
• Coordinates
  • Lat. (^o): -27.49999
  • Long. (^o): 153.01209

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043249	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119915_1039642	F043249	AGGAG	MPKIVGTRERVHQPFYDSLIRVDGATDLRGATVGAFGAVQARSQLFVRQGADLAVSNLTTGGFFPSDQTFITLAVRVWTYFRFNGEQQFVSGQGTFPVDSVAGLTSDRVMRVHKLYHQSQNQLFWQLVAGDKPQLTTFTAYTPFAGGLDGFFADSRLPRANNGVPTSSALMRLARPVLIPPRQGFQVVAIASPIGQSVGAPLIEEPTG