NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172373_10006163

Scaffold Ga0172373_10006163


Overview

Basic Information
Taxon OID3300013131 Open in IMG/M
Scaffold IDGa0172373_10006163 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)16065
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameDemocratic Republic of the Congo: South-Kivu
CoordinatesLat. (o)-1.64Long. (o)29.05Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007913Metagenome / Metatranscriptome342Y
F018159Metagenome236Y
F038593Metagenome165Y
F057985Metagenome135N
F104714Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0172373_1000616312F018159AGGMSFDDRTVIAGLAAHLSAKAAPAGYTLRTVHSFPPDNLAVVPAAVIIPGDDSINYGASNRQITLTLNVVIYIQPQADLGRKYQDLMAWRTWLRDSLIDGVTLNNTGDVAQASVTSTNIGTDTWGDQDFLTITATVEIASVEAIATSA*
Ga0172373_1000616315F104714AGGAGGMNIWHRIKKLAGKGEPRINAEASPSLVERAIVVRWGNTATIKRTPVQWREKGKSE*
Ga0172373_100061632F007913GGAGMPARSQNSEILDRLDRIERDLGTIKMELAETRGAYRLAKFIVALLGISGLGGVTAWLMGQGK*
Ga0172373_100061637F057985AGGAGMAANSLDRLTISFNVDSNYKALQLGFLEGANPGAYKRLLSIATLNAARTMVKPMRAEAPVGKTTKTPGRLRKAVTARRARFNTPAAVVGPRAGRSRDGGSGGAWYRWFVTSGISGVRRTKNGVKSVRAVPANPFVTRVSKNEAHQKTAMEAMAKTVESFFNNEAFRRTILRFKRR*
Ga0172373_100061639F038593AGGAGGMTQAKPSFRTVEIVLAAPFDGWTTTMRAEGVPARVMIDLQSGSVERALNAMERLIVKHNFLNEHGEPAASVLDAPMDALTQAVEKWSEAVAALPPR*
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