Scaffold Ga0172373_10001476

Overview

Basic Information

• Taxon OID: 3300013131
• Scaffold ID: Ga0172373_10001476
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 38029
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (73.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047018	Metagenome / Metatranscriptome	150	Y
F057139	Metagenome	136	Y
F093347	Metagenome / Metatranscriptome	106	Y
F098748	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172373_1000147615	F047018	AGGAG	MFRLIGIAAVLYVGWITGIIQATLILMAAGLTTVAGLG*
Ga0172373_100014763	F057139	N/A	VRIVKLTRNYNGYGVFTHRVEFYGGTRQHRVQQWISVRNWLWQQFGPSAEQFLARPELFDGVQPQWAWDSEKSAVYLKEQALVMFQLKKEFWENAENL*
Ga0172373_1000147642	F098748	GGAG	MIEQLQFLSTCGRPWAEQRAQFALEITGALQKGEISQSEYQALMADLIQSDKLNAEADDMDIKNMLVSCVMIGAKLA*
Ga0172373_1000147665	F093347	AGGAGG	MRQKKLIAELYQACFDHDAKKMAELRKEEFQKILKRKAEGKHFTHRWTVVQI*