Scaffold Ga0172373_10000715

Overview

Basic Information

• Taxon OID: 3300013131
• Scaffold ID: Ga0172373_10000715
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 54729
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (50.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004863	Metagenome	420	Y
F006099	Metagenome	381	Y
F022410	Metagenome / Metatranscriptome	214	Y
F038097	Metagenome	166	Y
F081041	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172373_1000071510	F004863	AGGA	MKLMVAGCSFSAVSKSLPGTAWSEVLAKKLGWDLVNLARQGCSNGGIRIQIDEIRRQRADFAVITPTFWDRMEIPANSVPYDWNQKPSSGVNPPLEQHLQNRALGNGYRREDGIRNVNYGTEPSNMICETIFTLAENFDHPYRMARITKQAQTGVRHWIDSIYDNAWKKQCDEWIMRDGITMMYLDGIRFIVCPNLLWPFDPANSSQWREAFPSIVPDHYINLDPARSPQAICGNNPFKGEDPGYHSSPAGQEIIAEHFYQTWLDHFK*
Ga0172373_1000071512	F006099	N/A	MSLQPEFANNLIGIDRTCIASPVPQEELWPVFEKYGIDTAKLDYAPDSEIYRIYPEVNNWVFEGDYRTYWLRQQAIKFAFLDYLNYDLMIMHDCDCLLIRPYEPIKDGVLNFQVLENERHSWGYYESIKNGLGFDRLTPHCFISENVPVLKQDFNDLVKFLEEKHQKKWLDAMIDSCPPEPTVPPWGNGELIRWFSEYEFIGNWTMSRRPITQEFQRRYHYDDMEKIGDFDPSYHTAVCDAVPDLSRSLQMDWERKEVVKFDYYMDKIRETLARLT*
Ga0172373_1000071534	F038097	AGGAG	MIITNRTGKIRLPWEPGLLEWLQEHYPASQYRVVELT*
Ga0172373_1000071560	F022410	AGG	MMKFTVEWNDPMHRWDVVRWATSAEGVWAGTTVDRCSVLEDAEEICAYHTDMMNPELWADHECEFDREIA*
Ga0172373_1000071589	F081041	N/A	MGIESAATFLVCTILLGSGVTVIVGVILLINNLLHRYWKDLHWNLPEALHGMPYHRYQQHNLDRSQE