Scaffold Ga0172367_10028043

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10028043
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 5009
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016388	Metagenome / Metatranscriptome	247	N
F062727	Metagenome / Metatranscriptome	130	Y
F065780	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1002804310	F065780	GAG	MKKIIAYIADNTWTWVGTGMVLITLSGPTLRQALLLTGVGIVLHSLISLSQKDTE*
Ga0172367_100280437	F062727	N/A	MDGGWALILSAVVTAVGGVIVTVIAQFRKENQEDHAVVANMLQHLFGSVGRVEVKVDKVGADLESHIREHKK*
Ga0172367_100280439	F016388	N/A	MNAAIAKALDLGQRLISLFIASALPIITGGAILGVDVFKSAGVAGLTALFGVVQKLAAASVDGELTSEEIAAAFGTPKKKAK*