Basic Information | |
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Taxon OID | 3300013126 Open in IMG/M |
Scaffold ID | Ga0172367_10008488 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 11475 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (20.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F041194 | Metagenome | 160 | Y |
F053293 | Metagenome / Metatranscriptome | 141 | N |
F062754 | Metagenome / Metatranscriptome | 130 | N |
F065436 | Metagenome | 127 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0172367_1000848816 | F041194 | N/A | MENITISCNYCNTPVKLKRDKIYMNCHCCDDRRIIDIREYLIEDKHHDYLYSMFNDDYEYVNAK* |
Ga0172367_1000848822 | F053293 | N/A | MVTKEIIIDILKDKENFVNIVKDFPGLYSSCVTIKQNVSVENVDNAMNKILSFLEKSEPFKKLIQNLVNTPKVIEKNDISGTVLEIDKNDESYSKLIEQSKKEKWIYKGLTIVDGYDKLKVYFY* |
Ga0172367_100084884 | F062754 | AGGAG | MKRLTKKEREDIKMRLEYFDKIVKETRELIKQGYTLPDLSNLVIPRQ* |
Ga0172367_100084885 | F065436 | N/A | MKYQYEIKIHTVIDYNELEKVMNKYGKSGVRVIKAEFIGDKYENNRPVKTYVLYLESKIK |
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