Basic Information | |
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Taxon OID | 3300013126 Open in IMG/M |
Scaffold ID | Ga0172367_10007363 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 12639 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (4.17%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008080 | Metagenome / Metatranscriptome | 339 | Y |
F025688 | Metagenome / Metatranscriptome | 200 | Y |
F041765 | Metagenome / Metatranscriptome | 159 | Y |
F053245 | Metagenome / Metatranscriptome | 141 | Y |
F060851 | Metagenome / Metatranscriptome | 132 | N |
F063489 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0172367_1000736311 | F063489 | N/A | MNKRYIVRDKDGTYQSAYNLALGKKQAYDWAMQCAKSVNGVVYYVEGEKEQEVYRAPENRRY* |
Ga0172367_1000736317 | F060851 | N/A | MKAILEFNLPEDQRAFEMANQAVDMVAALGHFEDRLRSYIKYGHEFKSANEALEAVRALLHEEINLRRINIHDC* |
Ga0172367_100073632 | F041765 | N/A | MINHKKILEDSADFFNKEVDKVITNISTAKNAKQRNKYLKQMFALKNRLQLEVKMLDDHTDF* |
Ga0172367_1000736320 | F008080 | N/A | MRGTNEYSRHTIPGPTPDQTQEEFEEAYRESGECFCEGDTWELCPYFNFEKRDSIDVYLGGDDNIKNDEKPVYVTSNWGDFEFVKGGGVNYIPQEPDETGKVNIWWYHDMKFNDVYYWTNVTEFDPSKLQVQYGVDQDGNKYLEDLIYDGEHPDDFNDFGDSGYGYTGPEFIYHPDQKFAEKDEE* |
Ga0172367_100073635 | F053245 | N/A | MKHVIINIGDDDLKDIAEIFKNEADFKPQARQDILIIEILRQVLNNPKTEIVDTIDL* |
Ga0172367_100073636 | F025688 | N/A | MKYILNVDGTNTGGKFLENYIGQEVDIESLYKNIDVNSPPLAILKTNDGNQHSIQLIDIRFIGEYIYIHCFAIQHDDKHGGKALLRLKPVCDLEKIVNP* |
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