NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172367_10007363

Scaffold Ga0172367_10007363


Overview

Basic Information
Taxon OID3300013126 Open in IMG/M
Scaffold IDGa0172367_10007363 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)12639
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.17%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameDemocratic Republic of the Congo: South-Kivu
CoordinatesLat. (o)-1.64Long. (o)29.05Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008080Metagenome / Metatranscriptome339Y
F025688Metagenome / Metatranscriptome200Y
F041765Metagenome / Metatranscriptome159Y
F053245Metagenome / Metatranscriptome141Y
F060851Metagenome / Metatranscriptome132N
F063489Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0172367_1000736311F063489N/AMNKRYIVRDKDGTYQSAYNLALGKKQAYDWAMQCAKSVNGVVYYVEGEKEQEVYRAPENRRY*
Ga0172367_1000736317F060851N/AMKAILEFNLPEDQRAFEMANQAVDMVAALGHFEDRLRSYIKYGHEFKSANEALEAVRALLHEEINLRRINIHDC*
Ga0172367_100073632F041765N/AMINHKKILEDSADFFNKEVDKVITNISTAKNAKQRNKYLKQMFALKNRLQLEVKMLDDHTDF*
Ga0172367_1000736320F008080N/AMRGTNEYSRHTIPGPTPDQTQEEFEEAYRESGECFCEGDTWELCPYFNFEKRDSIDVYLGGDDNIKNDEKPVYVTSNWGDFEFVKGGGVNYIPQEPDETGKVNIWWYHDMKFNDVYYWTNVTEFDPSKLQVQYGVDQDGNKYLEDLIYDGEHPDDFNDFGDSGYGYTGPEFIYHPDQKFAEKDEE*
Ga0172367_100073635F053245N/AMKHVIINIGDDDLKDIAEIFKNEADFKPQARQDILIIEILRQVLNNPKTEIVDTIDL*
Ga0172367_100073636F025688N/AMKYILNVDGTNTGGKFLENYIGQEVDIESLYKNIDVNSPPLAILKTNDGNQHSIQLIDIRFIGEYIYIHCFAIQHDDKHGGKALLRLKPVCDLEKIVNP*

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