Scaffold Ga0172367_10007363

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10007363
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 12639
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.17%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008080	Metagenome / Metatranscriptome	339	Y
F025688	Metagenome / Metatranscriptome	200	Y
F041765	Metagenome / Metatranscriptome	159	Y
F053245	Metagenome / Metatranscriptome	141	Y
F060851	Metagenome / Metatranscriptome	132	N
F063489	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1000736311	F063489	N/A	MNKRYIVRDKDGTYQSAYNLALGKKQAYDWAMQCAKSVNGVVYYVEGEKEQEVYRAPENRRY*
Ga0172367_1000736317	F060851	N/A	MKAILEFNLPEDQRAFEMANQAVDMVAALGHFEDRLRSYIKYGHEFKSANEALEAVRALLHEEINLRRINIHDC*
Ga0172367_100073632	F041765	N/A	MINHKKILEDSADFFNKEVDKVITNISTAKNAKQRNKYLKQMFALKNRLQLEVKMLDDHTDF*
Ga0172367_1000736320	F008080	N/A	MRGTNEYSRHTIPGPTPDQTQEEFEEAYRESGECFCEGDTWELCPYFNFEKRDSIDVYLGGDDNIKNDEKPVYVTSNWGDFEFVKGGGVNYIPQEPDETGKVNIWWYHDMKFNDVYYWTNVTEFDPSKLQVQYGVDQDGNKYLEDLIYDGEHPDDFNDFGDSGYGYTGPEFIYHPDQKFAEKDEE*
Ga0172367_100073635	F053245	N/A	MKHVIINIGDDDLKDIAEIFKNEADFKPQARQDILIIEILRQVLNNPKTEIVDTIDL*
Ga0172367_100073636	F025688	N/A	MKYILNVDGTNTGGKFLENYIGQEVDIESLYKNIDVNSPPLAILKTNDGNQHSIQLIDIRFIGEYIYIHCFAIQHDDKHGGKALLRLKPVCDLEKIVNP*