Scaffold Ga0172367_10001152

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10001152
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 39577
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (72.73%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023292	Metagenome	210	Y
F038087	Metagenome	166	Y
F049426	Metagenome	146	Y
F051701	Metagenome	143	Y
F066456	Metagenome	126	Y
F066489	Metagenome	126	Y
F096871	Metagenome	104	Y
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1000115213	F038087	AGGA	MSNKTTIILSINSDIVSRFLFDDYINACNDAGMVVRYEPYTRDMYAELNAKALDIEKQDALASLEEEILNNVACVNGNCED*
Ga0172367_1000115215	F051701	AGGAG	MQVQIKLTDEQVDDILVEGLKSGYEINKTFPDEPNYYEIDQAFKTLLAYYMGDKNYAKYAHDRAKVNKTYNAKRLADAHNGL*
Ga0172367_1000115216	F066489	N/A	MLIMVCSGCVSLATSVATQTTVQVVGEQYLIAQNKPIIRCNLFNVAKGNKMCRVYKQYRRA*
Ga0172367_1000115224	F066456	AGGAGG	MGFHINVYNMPRIETYDRAKEDFNSRTVVRGESQSIRRLGDRYEKEKWIRKDIIDGIEVYVAGYYDTDLVRFYPTHKEITLGSYPSQSTEYFVWYISGHSLRDFEHKYYVPSPFTRSPMVKNHQIECEVWIGGDTYYMNARDWYAISYDNKALYPEQFEKPVKYKFDAKQMRELRLPYKKLLKYADTMLKLTNGEGVENDAELNKQSEEYRLPEYSKNLLPLCADEDKTNLAYYNVLRQCQHIKWLGNYPNHKESSYCNIGIFKRYLDKHIKLENPQVLVEVN*
Ga0172367_1000115235	F096871	N/A	MWVFQLALISGVMVGLELKFLEEDAPYVFSLVLDLFIIRLVIQKLKYVR*
Ga0172367_1000115238	F100665	GAGG	MAKPYIKVVSIKDTKQGDCKLTLDMNQAGREVILQAGIQKALSDYTVENSKKLSFWNKLQICWSILR*
Ga0172367_100011528	F049426	AGGAG	MKTKPIFKSWREYDREIYMSEYVTIPKSRYRRLIVSEVVSWGISIFLLLVMVLR*
Ga0172367_100011529	F023292	N/A	MNIDQVKEYVATQLKSYRVKDILDKFDDSEWLAMYEQIAKVKPWEVERRLIDWARHELEFFRYVLYKERHYEDLLFDKACLECLKCTDECETERKYYVRKPRS*