Scaffold Ga0172278_1047

Overview

Basic Information

• Taxon OID: 3300013121
• Scaffold ID: Ga0172278_1047
• Source Dataset Name: Activated sludge microbial communities from Jimei wastewater treatment plant (WWTP), Xiamen City, Fujian province, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Novogene Bioinformatics Technology Co., Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 121412
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (67.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Jimei Wastewater Treatment Plant (Wwtp), Xiamen City, Fujian Province, China

Source Dataset Sampling Location

• Location Name: Jimei WWTP, Xiamen City, Fujian province
• Coordinates
  • Lat. (^o): 24.25
  • Long. (^o): 117.57

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012261	Metagenome	282	Y
F051169	Metagenome / Metatranscriptome	144	Y
F056039	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172278_104719	F056039	GGGGG	MPTPVLPWNCPNPYCEEPHNPASVPVGGLIKCRSCGWERKIRAPEPENLDDWPGLFTPVEPTKG*
Ga0172278_104727	F051169	AGGAG	VSAEVAAACECTHEPPHRFTIAGRARVRGGVLLTLRRVDEPYPPRDVFVTNRELKMGSDNVFKACFVCVDRGFRETAIALPKSDVELGLPPA*
Ga0172278_104775	F012261	N/A	VRRALAFLGSAFFVFYCTAVGVYLVLRPWTGRAAHPGIFGSGFFRGFVSGLGLLHLAAGAADLKALSRTLQGDPPPEASE*