Metagenome / Metatranscriptome Family F056039

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056039
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	65 residues
Representative Sequence	MPPVNLPWNCPNPYCENPHNPSSVPVNGVIRCHSCGWERKVKAPEPENLDDWPGLFTPIEPAKK
Number of Associated Samples	112
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.77 %
% of genes near scaffold ends (potentially truncated)	26.81 %
% of genes from short scaffolds (< 2000 bps)	87.68 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.710 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (7.246 % of family members)
Environment Ontology (ENVO)	Unclassified (39.855 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.275 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.26% β-sheet: 11.96% Coil/Unstructured: 84.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF08206	OB_RNB	42.03
PF03745	DUF309	21.74
PF00719	Pyrophosphatase	6.52
PF09923	DUF2155	0.72
PF13620	CarboxypepD_reg	0.72
PF01648	ACPS	0.72
PF00005	ABC_tran	0.72
PF09012	FeoC	0.72
PF00174	Oxidored_molyb	0.72
PF00144	Beta-lactamase	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0557	Exoribonuclease R	Transcription [K]	42.03
COG1158	Transcription termination factor Rho	Transcription [K]	42.03
COG1278	Cold shock protein, CspA family	Transcription [K]	42.03
COG4776	Exoribonuclease II	Transcription [K]	42.03
COG1547	Predicted metal-dependent hydrolase	Function unknown [S]	21.74
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	6.52
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.72
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.72
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.72
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.72
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.71 %
Unclassified	root	N/A	20.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.71 %
Unclassified	root	N/A	20.29 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.71 %
Unclassified	root	N/A	20.29 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	44.20 %
Unclassified	root	N/A	20.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.04 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.72 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	43.48 %
Unclassified	root	N/A	20.29 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	12.32 %
Holophagae	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae	0.72 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.72 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	43.48 %
Unclassified	root	N/A	20.29 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	12.32 %
unclassified Holophagae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae	0.72 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.72 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	43.48 %
Unclassified	root	N/A	20.29 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	0.72 %
Holophagae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	0.72 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.72 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.72 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	43.48 %
Unclassified	root	N/A	20.29 %
Thermoguttaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae	0.72 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.72 %
Holophagae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	0.72 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.72 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	43.48 %
Unclassified	root	N/A	20.29 %
Thermogutta	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta	0.72 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.72 %
Holophagae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	0.72 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.72 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	43.48 %
Unclassified	root	N/A	20.29 %
unclassified Thermogutta	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → unclassified Thermogutta	0.72 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.72 %
Holophagae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	0.72 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.72 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	43.48 %
Unclassified	root	N/A	20.29 %
Thermogutta sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → unclassified Thermogutta → Thermogutta sp.	0.72 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.72 %
Holophagae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	0.72 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.72 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104859466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300000550\|F24TB_12569893	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300000956\|JGI10216J12902_102973821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	732	Open in IMG/M
3300001431\|F14TB_101798614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300004114\|Ga0062593_100680964	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	999	Open in IMG/M
3300004114\|Ga0062593_101261125	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300004480\|Ga0062592_101270274	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300004643\|Ga0062591_101173083	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300005093\|Ga0062594_101558419	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300005328\|Ga0070676_10276694	Not Available	1129	Open in IMG/M
3300005328\|Ga0070676_10605632	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300005330\|Ga0070690_100154189	Not Available	1569	Open in IMG/M
3300005330\|Ga0070690_100249825	Not Available	1254	Open in IMG/M
3300005331\|Ga0070670_100051963	Not Available	3519	Open in IMG/M
3300005332\|Ga0066388_100035307	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4812	Open in IMG/M
3300005332\|Ga0066388_101426570	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300005332\|Ga0066388_106448366	Not Available	592	Open in IMG/M
3300005332\|Ga0066388_106797184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300005338\|Ga0068868_101352719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300005340\|Ga0070689_101695837	Not Available	575	Open in IMG/M
3300005344\|Ga0070661_100825735	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → unclassified Thermogutta → Thermogutta sp.	762	Open in IMG/M
3300005347\|Ga0070668_100502851	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1049	Open in IMG/M
3300005355\|Ga0070671_100487304	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300005355\|Ga0070671_101424169	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300005356\|Ga0070674_100732096	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300005356\|Ga0070674_102077181	Not Available	518	Open in IMG/M
3300005438\|Ga0070701_11193557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300005445\|Ga0070708_100381375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1329	Open in IMG/M
3300005445\|Ga0070708_100627526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1013	Open in IMG/M
3300005459\|Ga0068867_100034960	All Organisms → cellular organisms → Bacteria → Proteobacteria	3644	Open in IMG/M
3300005467\|Ga0070706_100252889	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1645	Open in IMG/M
3300005518\|Ga0070699_101161371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300005536\|Ga0070697_100279936	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300005536\|Ga0070697_101991046	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300005543\|Ga0070672_100222508	All Organisms → cellular organisms → Bacteria	1583	Open in IMG/M
3300005544\|Ga0070686_100147270	Not Available	1645	Open in IMG/M
3300005548\|Ga0070665_100738149	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300005564\|Ga0070664_100415706	Not Available	1231	Open in IMG/M
3300005564\|Ga0070664_101471922	Not Available	644	Open in IMG/M
3300005564\|Ga0070664_102006164	Not Available	549	Open in IMG/M
3300005578\|Ga0068854_101849580	Not Available	554	Open in IMG/M
3300005718\|Ga0068866_11018682	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	589	Open in IMG/M
3300005764\|Ga0066903_100475693	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
3300005764\|Ga0066903_101755170	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300005764\|Ga0066903_102439350	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300005764\|Ga0066903_103075434	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	903	Open in IMG/M
3300005764\|Ga0066903_108036043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300005836\|Ga0074470_11512056	All Organisms → cellular organisms → Bacteria	2638	Open in IMG/M
3300005841\|Ga0068863_100149933	All Organisms → cellular organisms → Bacteria	2231	Open in IMG/M
3300005937\|Ga0081455_10037392	All Organisms → cellular organisms → Bacteria	4312	Open in IMG/M
3300006169\|Ga0082029_1675474	Not Available	536	Open in IMG/M
3300006358\|Ga0068871_100261079	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300006358\|Ga0068871_101055742	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300006575\|Ga0074053_11548033	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300006806\|Ga0079220_11156250	Not Available	633	Open in IMG/M
3300006852\|Ga0075433_10031849	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4511	Open in IMG/M
3300006854\|Ga0075425_100679421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1183	Open in IMG/M
3300006881\|Ga0068865_100443957	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1071	Open in IMG/M
3300009053\|Ga0105095_10086401	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1696	Open in IMG/M
3300009098\|Ga0105245_11647127	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300009146\|Ga0105091_10571434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300009177\|Ga0105248_10477497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1405	Open in IMG/M
3300009818\|Ga0105072_1092200	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300009870\|Ga0131092_10003097	All Organisms → cellular organisms → Bacteria	34364	Open in IMG/M
3300010154\|Ga0127503_10209494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300010359\|Ga0126376_12939361	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300010361\|Ga0126378_10061289	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3559	Open in IMG/M
3300010366\|Ga0126379_13266842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300010373\|Ga0134128_11014417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	917	Open in IMG/M
3300010373\|Ga0134128_12540711	Not Available	564	Open in IMG/M
3300010375\|Ga0105239_11275256	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	847	Open in IMG/M
3300010398\|Ga0126383_12431884	Not Available	609	Open in IMG/M
3300010401\|Ga0134121_11310059	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300012913\|Ga0157298_10126941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300012948\|Ga0126375_11880814	Not Available	525	Open in IMG/M
3300012960\|Ga0164301_11759132	Not Available	520	Open in IMG/M
3300012971\|Ga0126369_11251914	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	832	Open in IMG/M
3300013121\|Ga0172278_1047	All Organisms → cellular organisms → Bacteria	121412	Open in IMG/M
3300013296\|Ga0157374_12157816	Not Available	584	Open in IMG/M
3300013770\|Ga0120123_1005369	All Organisms → cellular organisms → Bacteria	2396	Open in IMG/M
3300015168\|Ga0167631_1014863	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1193	Open in IMG/M
3300015371\|Ga0132258_10366276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3570	Open in IMG/M
3300015371\|Ga0132258_12330150	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1342	Open in IMG/M
3300015372\|Ga0132256_100022212	All Organisms → cellular organisms → Bacteria	5649	Open in IMG/M
3300015372\|Ga0132256_102701797	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300015373\|Ga0132257_100148845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2741	Open in IMG/M
3300015373\|Ga0132257_103368617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300015374\|Ga0132255_103971537	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300015374\|Ga0132255_104468502	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300016387\|Ga0182040_11207425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300017792\|Ga0163161_11038539	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701	Open in IMG/M
3300017936\|Ga0187821_10312877	Not Available	626	Open in IMG/M
3300017947\|Ga0187785_10208688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300017974\|Ga0187777_10557611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
3300018060\|Ga0187765_10173134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1232	Open in IMG/M
3300018060\|Ga0187765_10430792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300018084\|Ga0184629_10103386	Not Available	1396	Open in IMG/M
3300018089\|Ga0187774_11059732	Not Available	571	Open in IMG/M
3300021445\|Ga0182009_10168867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1049	Open in IMG/M
3300021559\|Ga0210409_10178021	All Organisms → cellular organisms → Bacteria	1943	Open in IMG/M
3300025315\|Ga0207697_10048076	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
3300025893\|Ga0207682_10002747	All Organisms → cellular organisms → Bacteria	7793	Open in IMG/M
3300025899\|Ga0207642_10595916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300025900\|Ga0207710_10351948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	750	Open in IMG/M
3300025903\|Ga0207680_10196201	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1373	Open in IMG/M
3300025907\|Ga0207645_10868758	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	613	Open in IMG/M
3300025910\|Ga0207684_11068179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300025926\|Ga0207659_11257858	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	636	Open in IMG/M
3300025926\|Ga0207659_11751022	Not Available	528	Open in IMG/M
3300025931\|Ga0207644_10364336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1176	Open in IMG/M
3300025931\|Ga0207644_11051216	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300025936\|Ga0207670_11480426	Not Available	577	Open in IMG/M
3300025961\|Ga0207712_10247454	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1439	Open in IMG/M
3300025986\|Ga0207658_10139296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1961	Open in IMG/M
3300026088\|Ga0207641_11222514	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	751	Open in IMG/M
3300027490\|Ga0209899_1076765	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300027731\|Ga0209592_1063377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1373	Open in IMG/M
3300028379\|Ga0268266_11479058	Not Available	655	Open in IMG/M
3300028380\|Ga0268265_10220342	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1660	Open in IMG/M
3300028381\|Ga0268264_10680149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1021	Open in IMG/M
3300028792\|Ga0307504_10040644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1283	Open in IMG/M
3300030606\|Ga0299906_10131690	Not Available	1986	Open in IMG/M
3300031235\|Ga0265330_10157054	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	966	Open in IMG/M
3300031543\|Ga0318516_10118129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1510	Open in IMG/M
3300031711\|Ga0265314_10156880	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300031740\|Ga0307468_101950592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300031821\|Ga0318567_10890496	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300031834\|Ga0315290_10977599	Not Available	714	Open in IMG/M
3300032066\|Ga0318514_10648248	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300032180\|Ga0307471_101741882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300032180\|Ga0307471_102344977	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300032205\|Ga0307472_101931799	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	589	Open in IMG/M
3300032261\|Ga0306920_102567380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300032782\|Ga0335082_10918359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300032828\|Ga0335080_10586129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1174	Open in IMG/M
3300032954\|Ga0335083_10692841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300032955\|Ga0335076_10004320	All Organisms → cellular organisms → Bacteria	14374	Open in IMG/M
3300033808\|Ga0314867_125277	Not Available	600	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.97%
Host-Associated	Host-Associated	40.58%
Engineered	Engineered	1.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.17%
Plants	Host-Associated → Plants	40.58%
Aquatic	Environmental → Aquatic	5.80%
Wastewater	Engineered → Wastewater	1.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.77%
Freshwater	Environmental → Aquatic → Freshwater	4.35%
Sediment	Environmental → Aquatic → Sediment	1.45%
Roots	Host-Associated → Plants → Roots	1.45%
Activated Sludge	Engineered → Wastewater → Activated Sludge	1.45%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	19.57%
Loam	Environmental → Terrestrial → Soil → Loam	17.39%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.35%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.45%
Sand	Environmental → Terrestrial → Soil → Sand	1.45%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.45%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	1.45%
Lake	Environmental → Aquatic → Freshwater → Lake	0.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.72%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	19.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.25%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.35%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.45%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.45%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.45%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.45%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	1.45%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.72%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.72%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.72%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.25%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.35%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.62%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.62%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.17%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.17%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.45%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.45%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	1.45%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.72%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.72%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.72%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.72%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.72%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.72%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.72%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013121	Activated sludge microbial communities from Jimei wastewater treatment plant (WWTP), Xiamen City, Fujian province, China	Engineered	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300015168	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033808	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1048594661	3300000364	Soil	MPIANLPWNCPNPYCEEPHNPTSIPVDGVVKCRSCGWERKIVAREPENLDDFPGLFTPIEPPKEGG*
F24TB_125698931	3300000550	Soil	MPIANLPWNCPNPYCEEPHNPTSIPVNGVVKCRSCGWERKVVAREPENLDDFPGLFTPIEPPKEGG*
JGI10216J12902_1029738211	3300000956	Soil	MPTPNLPWNCPNPYCEEPHNPTSIPVNGVVKCRSCGWERKIVAPEPENLDEFPGLFTPIEPPKEGG*
F14TB_1017986142	3300001431	Soil	RLSEMPIANLPWNCPNPYCEEPHNPTSIPVNGVVKCRSCGWERKVVAREPENLDDFPGLFTPIEPPKEGG*
Ga0062593_1006809641	3300004114	Soil	MGVPSLPWNCPNPYCEDPHNPSSTPENGVVRCHSCGWQRRVAVAQPESLDDFPELFQPREQPKKE*
Ga0062593_1012611252	3300004114	Soil	MVAPTLPWNCPNPYCEDPHNPSSSAENGVVRCHSCGWQRKVAVAQPESLDDFPELFQPRDQPRKE*
Ga0062592_1012702741	3300004480	Soil	MVALTLPWNCPNPYCEDPHNPSSSAENGVVRCHSCGWQRKVAVAQPESLDDFPELFQPRDQPRKE*
Ga0062591_1011730832	3300004643	Soil	MVAPTLPWNCPNPYCEDPHNPSSSAENGVVRCHSCGWQRKVAVAQPESLDDFPELFQ
Ga0062594_1015584192	3300005093	Soil	MPVSNLPWNCPNPYCEDPHNPSTIVENGVARCHSCGWERRVAAPKPESLDDFPELFQPREAPKKD*
Ga0070676_102766943	3300005328	Miscanthus Rhizosphere	MSVPNLPWNCPNPYCEEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPP
Ga0070676_106056322	3300005328	Miscanthus Rhizosphere	MSIPNLPWNCPNPYCEDPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP*
Ga0070690_1001541892	3300005330	Switchgrass Rhizosphere	MPSLPWNCPNPYCKNPHNPDSTPVNGVIKCQSCGWERRMGPPPAEPVDDLPGLFTSYQEEPKKDDSE*
Ga0070690_1002498252	3300005330	Switchgrass Rhizosphere	SVPNLPWNCPNPYCEEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP*
Ga0070670_1000519633	3300005331	Switchgrass Rhizosphere	MSVPNLPWNCPNPYCEEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP*
Ga0066388_1000353073	3300005332	Tropical Forest Soil	MPMPNLPWNCPNPYCEEPHNPTSIPVNGVVKCRSCGWERKVVAPEPENLDDFPGLFTPIEPPKEGG*
Ga0066388_1014265702	3300005332	Tropical Forest Soil	MVAPDLPWNCPSPYCPDPHNPSSRPVNGVIRCRSCGWERRVAPPEPENLDDWPGLFTPREPEDQKNEG*
Ga0066388_1064483661	3300005332	Tropical Forest Soil	MSLPWNCPNPYCKEPHNPDSTPVNGVIKCRSCGWERRVAAPAPEPVDDLPGLFTTYQEEPKKDEPE*
Ga0066388_1067971842	3300005332	Tropical Forest Soil	MPTPNLPWNCPNPYCEEPHNPTSIPVNGVIKCRSCGWERKVKAPEPENIDDLPGLFTLIEPPKEGG*
Ga0068868_1013527192	3300005338	Miscanthus Rhizosphere	MGVPSLPWNCPNPYCEDPHNPSSTPENGVVRCHSCGWQRRVAVAQPESLDDFPGLFQPREQPKKE*
Ga0070689_1016958372	3300005340	Switchgrass Rhizosphere	MPVSNLPWNCPNPYCEDPHNPSAIVENGVARCHSCGWERRVAAPKPESLDDFPELFQPREAPKKD*
Ga0070661_1008257352	3300005344	Corn Rhizosphere	MVAPTLPWNCPNPYCEDPHNPSSSAENGVVRCHSCGWQRKVAVAQPESLDDFPELFQP
Ga0070668_1005028512	3300005347	Switchgrass Rhizosphere	MSIPNLPWNCPNPYCEDPHNASSVAEKGVVRCHSCGWERKVRAPEPENLDDWPNLFTPIEPPKP*
Ga0070671_1004873042	3300005355	Switchgrass Rhizosphere	MPVSNLPWNCPNPYCEDPHNPTTIVENGVARCHSCGWERKIAAPKPESLDDFPELFQPREAPKKE*
Ga0070671_1014241692	3300005355	Switchgrass Rhizosphere	MPTPDLPWNCPSPYCPDPHNPSSRPVDGMIRCRSCGWERRAAEVEPENLDDWPGLFAPKEPEKDAEP*
Ga0070674_1007320962	3300005356	Miscanthus Rhizosphere	MTVANLPWNCPNPYCQEPHNPSSIPVDGVIRCHSCGWERKVAAREPENVDDLPGLFSPRPAAKDEREP*
Ga0070674_1020771811	3300005356	Miscanthus Rhizosphere	MSIPNLPWNCPNPYCEDPHNPSSIAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP*
Ga0070701_111935571	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	PWNCPNPYCEDPHNPSTIVENGVARCHSCGWERRVAAPKPESLDDFPELFQPREAPKKD*
Ga0070708_1003813751	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPAPNLPWNCPNPYCEDPHNPSSAPVDGNVRCHSCGWERKVQVAEPESVDDLPGLFQPIEPPPDKEKS*
Ga0070708_1006275262	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPSLPWNCPNPYCKDPHNPSSTPVNGVIRCHSCGWERRVVQAEPEAVDDLPGLFSSIPGEPKKDPSE*
Ga0068867_1000349607	3300005459	Miscanthus Rhizosphere	MPSLPWNCPNPYCKNPHNPDSTPINGVIKCQSCGWERRMGPPPAEPVDDLPGLFTSYQEEPKKDDSE*
Ga0070706_1002528892	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSPNLPWNCPNPYCKDPHNPSSTTVNGVIKCRSCGWERRVAKPAPESVDDLPGLFSLLEPEPKKEPET*
Ga0070699_1011613711	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	PYCKDPHNPSSTPVNGVIRCHSCGWERRVVQAEPEAVDDLPGLFSSLPGEPKKDPSE*
Ga0070697_1002799362	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MPTPNLPWNCPNPYCEDPHNPTSVPVNGVIRCRSCGWERKVVAPEPENIDDLPGLFTPIEPPKKEGA*
Ga0070697_1019910462	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MPTPNLPWNCPNPYCENPHNPTSVPVNGVIRCRSCGWERKVVAPEPEDIDDLPGLFTPIEPPKREGG*
Ga0070672_1002225082	3300005543	Miscanthus Rhizosphere	LPWNCPNPYCEEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP*
Ga0070686_1001472701	3300005544	Switchgrass Rhizosphere	PWNCPNPYCKNPHNPDSTPVNGVIKCQSCGWERRMGPPPAEPVDDLPGLFTSYQEEPKKDDSE*
Ga0070665_1007381492	3300005548	Switchgrass Rhizosphere	MPVSNLPWNCPNPYCEDPHNPSTIVENGVARCHSCGWERRIAAPKPESLDDFPELFRPREEPKKD*
Ga0070664_1004157061	3300005564	Corn Rhizosphere	EEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP*
Ga0070664_1014719222	3300005564	Corn Rhizosphere	MPVSNLPWNCPNPYCEDPHNPTTIVENGVARCHSCGWERKIAAPKPESLDDFPELFQPREAPKKD*
Ga0070664_1020061641	3300005564	Corn Rhizosphere	MPVSNLPWNCPNPYCEDPHNPSTIVENGVARCHSCGWERRVAAPKPESLDDFPELFQPREAP
Ga0068854_1018495801	3300005578	Corn Rhizosphere	MVAPTLPWNCPNPYCEDPHNPSSSAENGVVRCHSCGWQRKVAVAQPESLDDFPELFQPRDQPGKE*
Ga0068866_110186821	3300005718	Miscanthus Rhizosphere	MPVSNLPWNCPNPYCEDPHNPTTIVENGVARCHSCGWERRVAAPKPESLDDFPELFQPREEPKKD*
Ga0066903_1004756933	3300005764	Tropical Forest Soil	MSLPWNCPNPYCKEPHNPDSTPVNGVIKCQSCGWERKAAAPPPEPVDDLPGLFTAYQEEPKKDDSE*
Ga0066903_1017551702	3300005764	Tropical Forest Soil	MGVPNLPWNCPNPYCEDPHNPSSIAVNGVIRCHSCGWERKVATPKPESLDDFPELFQPKEAPKKE*
Ga0066903_1024393502	3300005764	Tropical Forest Soil	MPAPDLPWNCPSPYCPDPHNPSSRPVDGKIRCRSCGWERSVVVREPENLDELPGLFAPREPEKEPKA*
Ga0066903_1030754342	3300005764	Tropical Forest Soil	MPGPDLPWNCPSPYCPDPHNPSSRPVNGVIRCRSCGWERRVAPPEPENLDDWPGLFTPKESEPKK*
Ga0066903_1080360432	3300005764	Tropical Forest Soil	MPALDLPWNCPSPYCPDPHNPSSKPVNGVIRCRSCGWERKIAPPEPENLDEWTGLFTPKEPEPKK*
Ga0074470_115120562	3300005836	Sediment (Intertidal)	MPIPVLPWNCPNPYCEEPHNASSVPVNGVIRCHSCGWERRIRAPEPENLDDWPGLFTPIEPPKG*
Ga0068863_1001499332	3300005841	Switchgrass Rhizosphere	MPIPILPWNCPNPYCEEPHNASSVPVNGVVRCHSCGWERKIRAPEPENLDEWPGLFTPIEPPKG*
Ga0081455_100373923	3300005937	Tabebuia Heterophylla Rhizosphere	MAPMSVPNLPWNCPNPYCEDPHNPSSVAVEGIVRCHSCGWERKVRAPEPENLDDWPNLFVPIEPPKP*
Ga0082029_16754742	3300006169	Termite Nest	MSVPNLPWNCPNPYCEDPHNPSSVAVNGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKTTEGS*
Ga0068871_1002610793	3300006358	Miscanthus Rhizosphere	MPSLPWNCPNPYCKDPHNPDSTPVNGVIKCQSCGWERRVGPPPPEPVDDLPGLFTSYQEEPKKDDSE*
Ga0068871_1010557421	3300006358	Miscanthus Rhizosphere	LGLPVRMSVPNLPWNCPNPYCEEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP*
Ga0074053_115480332	3300006575	Soil	MSPNLPWNCPNPYCKEPHNPSSTPVNGVIKCRSCGWERRVAAPEPEAVDDLPGLFTTLQEEPTTDPEPDPEKEPEG*
Ga0079220_111562502	3300006806	Agricultural Soil	MAVPNLPWNCPSPYCEDPHNPSTIVVDGVIRCHSCGWERKVAQPKPESLDDFPGLFQPKEEPKKE*
Ga0075433_100318492	3300006852	Populus Rhizosphere	MPTLNLPWNCPNPYCEEPHNPTSIPVNGVVKCRSCGWERKVVAPEPENLDEFPGLFTPIEPPKEGG*
Ga0075425_1006794212	3300006854	Populus Rhizosphere	MAAPDLPWNCPSPYCPDPHNPSSRPVDGVIRCRSCGWERRIAPPEPENLDDWPGLFEVPEPEKDPKP*
Ga0068865_1004439571	3300006881	Miscanthus Rhizosphere	MPSLPWNCPNPYCKNPHNPDSTPVNGVIKCQSCGWERRMGPPPAEPVDDLPGLFTSYQEE
Ga0105095_100864012	3300009053	Freshwater Sediment	MPTPILPWNCPNPYCEEPHNAASAPVNGVVRCRSCGWERKMKAPEPENLDDWPGLFTPIDKPEG*
Ga0105245_116471272	3300009098	Miscanthus Rhizosphere	MSIPNLPWNCPNPYCEEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP*
Ga0105091_105714342	3300009146	Freshwater Sediment	MSVPNLPWNCPNPYCEDPHNSSSVPVDGVVRCHSCGWERHVRALEPENLDDWPNLFTPIEPPKA*
Ga0105248_104774972	3300009177	Switchgrass Rhizosphere	MPVSNLPWNCPNPYCEDPHNPSTIVENGVARCHSCGWERRVAAPKPESLDDFPELFRPREEPKKD*
Ga0105072_10922002	3300009818	Groundwater Sand	MPPVNLPWNCPNPYCENPHNPSSVPVNGVIRCHSCGWERKVTAPELDNLDDWPGLFTPIEPAKK*
Ga0131092_1000309719	3300009870	Activated Sludge	MPFPDLPWNCPSPYCPDPHNPSSKPVDGVIRCRSCGWERRVAAPEPESVDDLPGLFAPRDPEPDAEP*
Ga0127503_102094942	3300010154	Soil	DLPWNCPSPYCSEPHNPSSRPVNGVIRCRSCGWERRVAPAEPENLDDWPGLFVPKDGDEESKP*
Ga0126376_129393612	3300010359	Tropical Forest Soil	MAAPDLPWNCPSPYCTDPHNPTSRPVDGVIRCHSCGWERRVVEREPENVDDLPGLFQVSEPEKKPDP*
Ga0126378_100612893	3300010361	Tropical Forest Soil	MPPDLPWNCPSPYCPDPHNPSSKPVNGVIRCRSCGWERRVAPPEPENLDDWPGLFTPKDPEPKK*
Ga0126379_132668421	3300010366	Tropical Forest Soil	MPALDLPWNCPSPYCPDPHNPSSKPVNGVIRCRSCGWERRVAPPEPENLDEWTGLFTPKEPEPKK*
Ga0134128_110144172	3300010373	Terrestrial Soil	MPSLPWNCPYPYCKNPHNPDSTPVNGVIKCQSCGWERRMGPPPAEPVDDLPGLFTSYQEEPKKDDSE*
Ga0134128_125407112	3300010373	Terrestrial Soil	MPSLPWNCPNPYCKEPHNPDSTPVNGVIKCQSCGWERRVGPPPAEPVDDLPGLFTT
Ga0105239_112752562	3300010375	Corn Rhizosphere	MVALTLPWNCPNPYCEDPHNPSSSAENGVVRCHSCGWQRKVAVAQPESLDDFPELFQ
Ga0126383_124318842	3300010398	Tropical Forest Soil	MPALDLPWNCPSPYCPDPHNPSSKPVNGVIRCRSCGWERRVAPPEPENLDDWPGLFTPREAVKTDEPEKDEKGDKDERP*
Ga0134121_113100592	3300010401	Terrestrial Soil	PWNCPNPYCKEPHNPDSTPVNGVIKCQSCGWERRVGPPPAEPVDDLPGLFTTYQEEPKKDDTE*
Ga0157298_101269412	3300012913	Soil	PNPYCEDPHNPSSTPENGVVRCHSCGWQRRVAVAQPESLDDFPELFQPREQPKKE*
Ga0126375_118808141	3300012948	Tropical Forest Soil	MSLPWNCPNPYCKEPHNPDSTPVNGVIKCRSCGWERRVAAPPPEPVDDLPGLFSNYQEEPKKDESE*
Ga0164301_117591321	3300012960	Soil	MPVSNLPWNCPNPYCEDPHNPSAIVENGVARCHSCGWERRVAAPKLESLDDFPELFQPREAPKKD*
Ga0126369_112519142	3300012971	Tropical Forest Soil	MKATEASAMAAPDLPWNCPSPYCPDPHNPSSTPVDGKIKCRSCGWERPVVVRAPENLDDLPGLFEPRAPEKDPKS*
Ga0172278_104719	3300013121	Activated Sludge	MPTPVLPWNCPNPYCEEPHNPASVPVGGLIKCRSCGWERKIRAPEPENLDDWPGLFTPVEPTKG*
Ga0157374_121578162	3300013296	Miscanthus Rhizosphere	MGVPSLPWNCPNPYCEDPHNPSSTPENGVVRCNSCGWQRRVAVAQPESLDDFPELFQPREQPKKE*
Ga0120123_10053692	3300013770	Permafrost	MPPNLPWNCPNPYCKDPHNPSSVPTDGVVKCRSCGWERKVAKAEPESIDDLPGLFAPLEGKPDKDPGESQ*
Ga0167631_10148633	3300015168	Glacier Forefield Soil	MAAPDLPWLCPSPHCSDPRNPSSRPVNGVIRCRSCGWERKVVAPEPENLDDFPGLFLPREPPKDDKP*
Ga0132258_103662763	3300015371	Arabidopsis Rhizosphere	MPLSVLPWNCPNPYCEEPHNEASVPVAGVIRCHSCGWERRIRAPEPENLDDWPGLFTPIEPPKG*
Ga0132258_123301502	3300015371	Arabidopsis Rhizosphere	MPSLPWNCPNPYCKDPHNPDSTPVNGVIKCQSCGWERRMGPPPAEPVDDLPGLFTSYQEEPKKDDSE*
Ga0132256_1000222127	3300015372	Arabidopsis Rhizosphere	MSPNLPWNCPNPYCKEPHNPSSTPVNGVIKCRSCGWERRVSAPEPEAVDDLPGLFTTLQEEPTTDPEPDPEKEPEG*
Ga0132256_1027017971	3300015372	Arabidopsis Rhizosphere	PYCEEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP*
Ga0132257_1001488452	3300015373	Arabidopsis Rhizosphere	MSPNLPWNCPNPYCKEPHNPSSTPVNGVIKCRSCGWERRVSAPEPEAVDDLPGLFTTLQEEPTVDPEPDPEKEPEG*
Ga0132257_1033686172	3300015373	Arabidopsis Rhizosphere	PWNCPNPYYEDPHNPSTTVENGVARCHSCGWERRVAAPKPESLDDFPELFQPREAPKKD*
Ga0132255_1039715372	3300015374	Arabidopsis Rhizosphere	LPWNCPNPYCEDPHNPSTIVENGVARCHSCGWERRIAAAKPESLDDFPELFQPREAPKKD
Ga0132255_1044685021	3300015374	Arabidopsis Rhizosphere	TMSPNLPWNCPNPYCKEPHNPSSTPVNGVIKCRSCGWERRVSAPEPEAVDDLPGLFTTLQEEPTTDPEPDPEKEPEG*
Ga0182040_112074252	3300016387	Soil	MPGPDLPWNCPSPYCPDPHNPSSKPVNGVIRCRSCGWERKIAPPEPENLDEWTGLFTPKEPEHKKEPEPKK
Ga0163161_110385391	3300017792	Switchgrass Rhizosphere	LPWNCPNPYCEEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP
Ga0187821_103128772	3300017936	Freshwater Sediment	MPTPDLPWNCPSPYCPEPHNPSSRPVDGVIRCRSCGCEKRVVGREPENLDDFPGLFQVPEPQKDPKP
Ga0187785_102086882	3300017947	Tropical Peatland	MSGPDLPWNCPSPYCPEPHNPSSRPVDGVIRCRSCGWERRVVEREPENLDDLPGLFEVPEPEKDPEP
Ga0187777_105576111	3300017974	Tropical Peatland	SPYCPDPHNPSSKPVGGVIRCRSCGWERRVAPSEPENLDDWPGLFTTKEPEPKN
Ga0187765_101731342	3300018060	Tropical Peatland	MPAPDLPWNCPSPYCPDPHNPSSKPVGGVIRCRSCGWERRVAPSEPENLDDWPGLFTTKEPEPKN
Ga0187765_104307921	3300018060	Tropical Peatland	MPAPDLPWNCPSPYCPDPHNPSSRPVDGVIRCRSCGWERRVASPQPENLDEWPGLFSPREPEGDPKS
Ga0184629_101033861	3300018084	Groundwater Sediment	MAARDLPWNCPSPYCTDPHNPSSKPVDGVVRCRSCGWERKATAPEPENIDDLPGLFSQKDPRKPEP
Ga0187774_110597322	3300018089	Tropical Peatland	MPAPDLPWNCPSPYCPDPHNPSSRPVDGVIRCRSCGWEKRVVEREPENVDDLPGLFQLPESEKDKKP
Ga0182009_101688672	3300021445	Soil	AGLSPMVANLPWNCPNPYCEDPHNPSSMTENGVVRCHSCGWERKVATPQPESLDDFPELFQPREEPKKE
Ga0210409_101780212	3300021559	Soil	MAPSLPWNCPNPYCKEPHNPSSTPVNGVIRCRSCGWERRVAAPEPEPVDDLPGLFAPYQEEPDKG
Ga0207697_100480761	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MSVPNLPWNCPNPYCEEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFT
Ga0207682_100027473	3300025893	Miscanthus Rhizosphere	MSVPNLPWNCPNPYCEEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP
Ga0207642_105959162	3300025899	Miscanthus Rhizosphere	MPSLPWNCPNPYCKNPHNPDSTPINGVIKCQSCGWERRMGPPPAEPVDDLPGLFTSYQEEPKKDDSE
Ga0207710_103519482	3300025900	Switchgrass Rhizosphere	MPSLPWNCPNPYCKNPHNPDSTPVNGVIKCQSCGWERRMGPPPAEPVDDLPGLFTSYQEEPKKDDSE
Ga0207680_101962013	3300025903	Switchgrass Rhizosphere	MPVSNLPWNCPNPYCEDPHNPSTIVENGVARCHSCGWERRVAAPKPESLDDFPELFQPREAPKKD
Ga0207645_108687581	3300025907	Miscanthus Rhizosphere	MPVSNLPWNCPNPYCEDPHNPSTIVENGVARCHSCGWERRVAAPKPESLDDFPEL
Ga0207684_110681792	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSPNLPWNCPNPYCKDPHNPSSTTVNGVIKCRSCGWERRVAKPAPESVDDLPGLFSLLEPEPKKEPET
Ga0207659_112578581	3300025926	Miscanthus Rhizosphere	MGVPSLPWNCPNPYCEDPHNPSSTPENGVVRCHSCGWQRRVAVAQPESLDDFPELF
Ga0207659_117510221	3300025926	Miscanthus Rhizosphere	MSIPNLPWNCPNPYCEDPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNLFTPIEPPKP
Ga0207644_103643361	3300025931	Switchgrass Rhizosphere	EAAMPVSNLPWNCPNPYCEDPHNPSTIVENGVARCHSCGWERRVAAPKPESLDDFPELFQPREAPKKD
Ga0207644_110512161	3300025931	Switchgrass Rhizosphere	MPTPDLPWNCPSPYCPDPHNPSSRPVDGMIRCRSCGWERRAAEVEPENLDDWPGLFAPKEPEKDAEP
Ga0207670_114804262	3300025936	Switchgrass Rhizosphere	MGVPSLPWNCPNPYCEDPHNPSSTPENGVVRCHSCGWQRRVAVAQPESLDDFPELFQPREQPKKE
Ga0207712_102474543	3300025961	Switchgrass Rhizosphere	MSVPNLPWNCPNPYCEEPHNASSVAEKGVVRCHSCGWERKVKAPEPENLDDWPNL
Ga0207658_101392961	3300025986	Switchgrass Rhizosphere	AAMPVSNLPWNCPNPYCEDPHNPSTIVENGVARCHSCGWERRVAAPKPESLDDFPELFQPREAPKKD
Ga0207641_112225141	3300026088	Switchgrass Rhizosphere	MPVSNLPWNCPNPYCEDPHNPTTIVENGVARCHSCGWERKIAAPKPESLDDFPELFQPRE
Ga0209899_10767652	3300027490	Groundwater Sand	MPPVNLPWNCPNPYCENPHNPSSVPVNGVIRCHSCGWERKVTAPEPENLDDWPGLFTPIEPAKK
Ga0209592_10633772	3300027731	Freshwater Sediment	MPTPILPWNCPNPYCEEPHNAASAPVNGVVRCRSCGWERKMKAPEPENLDDWPGLFTPIDKPEG
Ga0268266_114790582	3300028379	Switchgrass Rhizosphere	MPVSNLPWNCPNPYCEDPHNPSTIVENGVARCHSCGWERRIAAPKPESLDDFPELFRPREEPKKD
Ga0268265_102203421	3300028380	Switchgrass Rhizosphere	MVAPTLPWNCPNPYCEDPHNPSSSAENGVVRCHSCGWQRKVAVAQPESLDDFPELFQPRDQPRKE
Ga0268264_106801492	3300028381	Switchgrass Rhizosphere	MPIPILPWNCPNPYCEEPHNASSVPVNGVVRCHSCGWERKIRAPEPENLDEWPGLFTPIEPPKG
Ga0307504_100406442	3300028792	Soil	VSREAPRMAPYLPWNCPNPYCKDPHNPSSAPVNGVIRCRSCGWERRVAKPEPESVDDLPGLFSPLDGEPKKSPEE
Ga0299906_101316904	3300030606	Soil	MPPVNLPWNCPNPYCENPHNPSSVPVNGVIRCHSCGWERKVKAPEPENLDDWPGLFTPIEPAKK
Ga0265330_101570542	3300031235	Rhizosphere	MPAPDLPWICPSPYCEEPHNPSSRPVNGVIRCRSCGWERKVAAPEPESLDEFPGLFTPREPPKDEKP
Ga0318516_101181291	3300031543	Soil	MAAPDLPWNCPSPYCPDPHNPSSKPVNGVIRCRSCGWERKIAAPEPENLDEWTGLFTPKEPEHKKEPEPKK
Ga0265314_101568802	3300031711	Rhizosphere	MPALDLPWICPSPYCEEPHNPSSRPVNGVIRCRSCGWERKVAAPEPESLDEFPGLFTPREPPKDEKP
Ga0307468_1019505922	3300031740	Hardwood Forest Soil	NPYCEEPHNPTSIPDNGVIKCRSCGWERKVVAPEPENLDDFPGLFTPIQPPKEGG
Ga0318567_108904962	3300031821	Soil	PYCKEPHNADSTPVNGVIKCHSCGWERRVGAPPPEPVDDLPGLFTSYQEEPKKDESE
Ga0315290_109775991	3300031834	Sediment	MAARDLPWNCPSPYCTDPHNPSSKPVDGVVRCRSCGCERKVTEPEPENIDDLPGLF
Ga0318514_106482481	3300032066	Soil	MAAPDLPWNCPSPYCPDPHNPSSKPVNGVIRCRSCGWERKIAPPEPENLDEWTGLFTPKEPEHKKEPEPKK
Ga0307471_1017418821	3300032180	Hardwood Forest Soil	CEDPPEMPIANLPWNCPNPYCEEPHNPTSIPVDGVVKCRSCGWERKVVAPEPENLDDFPGLFTPIQPPKEGG
Ga0307471_1023449771	3300032180	Hardwood Forest Soil	CPSPYCTDPHNPSSRPVNGVIRCRSCGWERRVAPPEPENLDDWPGLFVPKEGDKDSEP
Ga0307472_1019317992	3300032205	Hardwood Forest Soil	MPSLPWNCPNPYCKDPHNPSSTPVNGVIRCHSCGWERRVVQAEPEAVDDLPGLFSSIPGEPKKDPSE
Ga0306920_1025673802	3300032261	Soil	MPNLPWNCPNPYCKEPHNADSTPVNGVIKCHSCGWERRVGAPPPEPVDDLPGLFTSYQEEPKKDESE
Ga0335082_109183592	3300032782	Soil	MAAPDLPWNCPSPYCPDPHNPSSRPVDGVIRCRSCGWERRVAPPEPENLDDWPGLFEPREPEKDPKA
Ga0335080_105861292	3300032828	Soil	MPAPDLPWNCPSPYCPDPHNPSSRPVNGVIRCRSCGWERKVATPEPENLDDWPGLFTPKEPEPKK
Ga0335083_106928411	3300032954	Soil	YCPEPHNPSSRPVDGVVRCRSCGWERRVEPPPAEDLDDLPGLFVERPKDGGD
Ga0335076_100043204	3300032955	Soil	MAAPDLPWNCPSPYCPEPHNPSSRPVDGVIRCRSCGWEKRAVERVPENLDDFPGLFQVPEPEKDPEA
Ga0314867_125277_238_435	3300033808	Peatland	MPAPDLPWNCPSPYCPDPHNPSSKAVDGVIRCRSCGWERRVAPIEPENLDDWPGLFTTKEPEPKN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056039

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences