Scaffold Ga0157371_10191735

Overview

Basic Information

• Taxon OID: 3300013102
• Scaffold ID: Ga0157371_10191735
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1463
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032135	Metagenome	180	Y
F046806	Metagenome	150	N
F094834	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157371_101917351	F046806	N/A	QEDTMNPVSGMHAAWLVRRVCAQHVEEAPLNESGGEYVARSIRSCAALTATLGARVNPIFMHEVIRLLEELHTVHAGTHPDIRQNAALTVNNAPDLIDRLQQQISAAVNELLAHTEPLTRRAEDRIPA*
Ga0157371_101917353	F094834	GAG	MSHLPTCRTRKELTGNVWVYYSEPDRNCNDQSHVDAYTEETQ*
Ga0157371_101917355	F032135	AGGAGG	MTTDPLDPAEQAAYRELDQTRRTPKACPDNCVCRHDDAMTTPLEIEDYQ*