Scaffold Ga0157373_10065940

Overview

Basic Information

• Taxon OID: 3300013100
• Scaffold ID: Ga0157373_10065940
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2562
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032135	Metagenome	180	Y
F046806	Metagenome	150	N
F094834	Metagenome	105	Y
F104372	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157373_100659401	F104372	N/A	AYTLPVEHGRPRTPKPGYEPISTDEWAEIIHLARTQRTEEAITAYGKRRTA*
Ga0157373_100659402	F046806	GAG	MHAAWLVRRVCGKHVEEAPLNETGGEYVARSIRSCAALTASLGARVNPIFMHEVIRLLEELHEVHAGTHHDLRQNQALTVNNAPDLIDRLQQQVSGAVQELLSHTEPLTRRAEDKVPA*
Ga0157373_100659405	F094834	AGGAG	MAHLNTCRTRKELTGNVWVYYSEPDRNCTDQSHVDAYTEENQ*
Ga0157373_100659406	F032135	AGGAG	MTPDPLDPAEQAAYRELDQTRRTGCADNCLCKQEDAMTTPLQLEDIE*