Scaffold Ga0164320_10009121

Overview

Basic Information

• Taxon OID: 3300013098
• Scaffold ID: Ga0164320_10009121
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3734
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.009
  • Long. (^o): -111.4081
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017499	Metagenome / Metatranscriptome	240	Y
F035780	Metagenome / Metatranscriptome	171	Y
F087903	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164320_1000912111	F017499	N/A	MHGITKDKVYVDLNWGFDPVLGYWYDIIETRDGEETVIEEWSSTTNGGSRSKMLEFLIKYNLPKEHRSMVGLDMPF*
Ga0164320_1000912113	F087903	N/A	MINSGREWDWMEEEEQVEEILTEANAYNLRAEVKTTAEMFIKDDPELSKTAAYQMAYIEWIK*
Ga0164320_100091216	F035780	N/A	MSEIKTIDSKEVWWATTKEYELDVEGEITTVRIAETSNSTEFFQWNEKSGWEEADTDGGIMKIVYEAWCNGELE*