Scaffold Ga0164296_1000506

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1000506
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45972
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (65.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026474	Metagenome / Metatranscriptome	197	Y
F033683	Metagenome	176	Y
F035607	Metagenome / Metatranscriptome	171	Y
F045505	Metagenome	152	Y
F067354	Metagenome / Metatranscriptome	125	Y
F096502	Metagenome / Metatranscriptome	104	Y
F102402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_100050616	F067354	AGGAG	MSTLFNNEAPRILPKSAFNKKSFLEIVSPLIKLDIIKEGEGLKCRNSHKLDLTNSIYEKIDEE*
Ga0164296_100050621	F096502	AGGAG	MEPRLNIKVASLFDKKADASPDNNFQDPSQQWIGDFIDEDSNHFDKNMQAYEEQRQGLGDQIQRYVDESHMHATDANPASDPVLMSQNPALVNSRDLQDVPTKAASKIASQSKGFRNSQARPDFTMGVVANTNKGTIVESRVVAETPTTKIAGTVIAVGDREFAVVWDDRTASVERKSDFELVIAE*
Ga0164296_100050640	F045505	N/A	MKKVTIVISYDAMNAQSDELASQEISETIAGLMNSLRTQVNGVQVSVKFQNNNKEK*
Ga0164296_100050646	F102402	GAG	MDSTSEYIGKVVALLTAILSEQENLAYEMVLESNPIELFSALAGVLLSALGKLATINDKKLEDYLKDLGMLAIRSE*
Ga0164296_100050648	F033683	N/A	MNYENIELEAKTAAADTRWFNGTSESILIRLDRLQDILDRTRVAASNPNTTDRELERYAGVLAELGAEKEQLEKLASEYVDFDAEDYLNSLPGGTIAKEYRVSSAGTSDLGADDGSLLYRTAASIENEFEDADWINFVTAGAEVWIEDQNNRLLKSQSNTREAAVFYVEKKTLPILDSAKRASIIDNFVDNVEICRRAKNDGNEFRSIKSAGKNKLAASFVQDAIDDSFGNDLNWL*
Ga0164296_100050659	F026474	N/A	MIARDILNTILTDAIANGHHKLAGNMDGLSDVVNIVLAAFSGVNLIHLGWMGWLGILPIGIVGKITTEKATKWSHKNIKAETE*
Ga0164296_10005067	F035607	AGGAG	MARTVSKSSDVSSESTPVSVVDLGGHYEEHIADPADRAAARSIAAVPPAFKGMQDVKTADWIENLMSGATVFTSAKGSFKLNGAGYHNSIQPIAEEIRQNPYVLRAVQRGRIAFITSDEAMEKIAELQDENSTSENHMDHLRESLAAGASDNNGMYKIPLPDEAEPKGPSQSWEQIWSSSTSTAKQKNV*