Scaffold Ga0163199_1016909

Overview

Basic Information

• Taxon OID: 3300013092
• Scaffold ID: Ga0163199_1016909
• Source Dataset Name: Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3736
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0621
  • Long. (^o): -124.7214
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013527	Metagenome / Metatranscriptome	270	Y
F050376	Metagenome / Metatranscriptome	145	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163199_101690910	F013527	GAG	MKNFEFLTYITVEAESHDEAIDVFQFQLKYGMNKNNVYVADIKDLELSE*
Ga0163199_10169096	F085708	GGAG	MNRLLTTLVQLFLLVPALIMGRMVWREIVADYIEWDKSH*
Ga0163199_10169097	F050376	GAGG	MNLDEYKAQVEAQRKASRLEAIATLTKANETISQLFNTKEAE*