Scaffold Ga0164277_138229

Overview

Basic Information

• Taxon OID: 3300013055
• Scaffold ID: Ga0164277_138229
• Source Dataset Name: Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C Kraft BY (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 761
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004248	Metagenome / Metatranscriptome	446	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164277_1382291	F004248	N/A	MTNIVSYGQYLDKKQIYDIVPYIDIKPEDLGTSDTYHEDKILQKFMSYKEDDRILIYKAALQLSIVGYGNKNYGFVRINDKDIIMLEDIFKRYNIKYMEKINAKYNDDDLSVRRLLRLFRFQIQDFIRTHNRPSFLWLKYAEKINKDFMYICFPGGEHLIETKEEAEFFLNTYGNLDNIINSKFRQRLQRIFIARNILQPQYFIDKNY*