3300013055: Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C Kraft BY (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300013055
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127392 | Gp0191758 | Ga0164277
• Sample Name: Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C Kraft BY (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33430965
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1
Not Available	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003009	Metagenome / Metatranscriptome	513	Y
F004248	Metagenome / Metatranscriptome	446	Y
F005470	Metagenome / Metatranscriptome	399	Y
F024692	Metagenome / Metatranscriptome	204	Y
F030315	Metagenome / Metatranscriptome	185	Y
F044934	Metagenome / Metatranscriptome	153	Y
F049342	Metagenome / Metatranscriptome	146	Y
F096377	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0164277_105068	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1638
Ga0164277_116295	Not Available	814
Ga0164277_125173	Not Available	1029
Ga0164277_138229	Not Available	761
Ga0164277_143103	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	774
Ga0164277_155533	Not Available	844
Ga0164277_155772	Not Available	543
Ga0164277_162050	Not Available	686

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0164277_105068	Ga0164277_1050682	F044934	MSTTISFTNLLITRRTLSMPGLRNRRVLLPFITIAFFLTMRMLALVTPVLGAAMIMLLLDRH*
Ga0164277_116295	Ga0164277_1162951	F030315	CCELVIKYDEFTAIFLSENSLQIKNDAEALKYSYRIGLDTLLVYTLNDGY*
Ga0164277_125173	Ga0164277_1251731	F024692	MGLCSSKAVDDGPGLGASQKSSAVSEAKENGNKDFRETLRTVVLLVLNRLATALEYEQEGFSELATKLEMKNYMQLCAPQHFEAVIKETWDLDRTPPEKPEVPSDHISFAQNKFIKLLEAAEKADWRDPSISAQELTDRIQEAAKATQKVLRDSAIASDSSDLKIHLFFFAKCLEVVDGDIAAHHELLYSNIDDLTEPK*
Ga0164277_138229	Ga0164277_1382291	F004248	MTNIVSYGQYLDKKQIYDIVPYIDIKPEDLGTSDTYHEDKILQKFMSYKEDDRILIYKAALQLSIVGYGNKNYGFVRINDKDIIMLEDIFKRYNIKYMEKINAKYNDDDLSVRRLLRLFRFQIQDFIRTHNRPSFLWLKYAEKINKDFMYICFPGGEHLIETKEEAEFFLNTYGNLDNIINSKFRQRLQRIFIARNILQPQYFIDKNY*
Ga0164277_143103	Ga0164277_1431031	F003009	YFNVNIGNLVKYFSILTVAFHDVHSLFGFFILLVVFSQLISGTMLSFSLVPESMMVPIVRDEEDLEDLYTDDFFWVHERGVDLLFIFS*
Ga0164277_155533	Ga0164277_1555331	F049342	YNNKETFIDLLPELKALSIDVTKNKFFAILNAIFDFMAYTYNSGFSKTDLEKYVETILDMLTNDILFENFFQNYVAHLRIIRAKKKFAFLFQRRLETDCFWVWSFSFLASMKNHYLGLLLSFEETFLEGGLILKWKNTESWVNNFIAFCYEKGIGTRKNLAKAAQLYKKDIDQMPRVLYSRYRKVLVVKEKRAHGLQLSQEEENINVDEQAEDLKLKIEERLEDTTRMDCYLFYVYGKIYEKIDEDNDRAIEWYQKGVDVDTDSCLKNHLLCNEAWRLKCK
Ga0164277_155772	Ga0164277_1557721	F005470	NTDMSVKVRKEGQVITEFPTDMVPRSRLLTKLVEEFNSTEVDLEPAPGKDFSPATINKVKEFLEKFEKGLHKMPKKPLLIFVTYNDWLDNNFDEKTREWLEDFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGVVTQYQDFFTPEEELKFIEKEFINKN
Ga0164277_162050	Ga0164277_1620501	F096377	EDKNEYLPSIDAKHSTNIFTTSLLNLIYRWKSFNVTHHKVAGKDRKYLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEEIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRLPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAHHE*