Scaffold Ga0170681_1025646

Overview

Basic Information

• Taxon OID: 3300013026
• Scaffold ID: Ga0170681_1025646
• Source Dataset Name: Gypsum rock hypoendolithic microbial communities from the Atacama Desert, Chile - Cordon de Lila
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Johns Hopkins Bayview Research CORES
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1252
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities

Source Dataset Sampling Location

• Location Name: Site Cordon de Lila - Atacama Desert, Chile
• Coordinates
  • Lat. (^o): -23.53976
  • Long. (^o): -68.68737

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068786	Metagenome / Metatranscriptome	124	Y
F093804	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170681_10256461	F093804	GGAG	MTDNSPDPKPVGDLSHRTLKKIGEIDPQSFEPNNKREMDFHSWKKQKSEKWQVYLDGNTGHLRQLKLR
Ga0170681_10256462	F068786	AGG	MSTTDTSEKTVDLVNSPEVQIMKEGEKDFIDIDIKNLEKGKFYRVEYEGDVYGIEKQDDGKIAYYEVVE*