Scaffold Ga0129327_10044060

Overview

Basic Information

• Taxon OID: 3300013010
• Scaffold ID: Ga0129327_10044060
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2250
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1043
  • Long. (^o): -76.1811

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008307	Metagenome / Metatranscriptome	335	Y
F030149	Metagenome / Metatranscriptome	186	N
F058911	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129327_100440601	F030149	AGAAGG	MFVPVKDKLDKLVALTPDDQEKLSHYKSIVPAMIANCHKAHQTIPGYESCKPEIEAFKWFDGINIPVHGYIDLKGDKVIIEDKCKMPRRGMVKKDGTRSWFPGKLPDKPSPYNLLQVDFYWSVFEVPVYLCYVNEKDFRVYH
Ga0129327_100440604	F008307	AGCAG	MVKVLKTSSLELAANFEEIFDGATVEEATQKAHDQKMPGESAKINITDNRFIKANVKMVGEEHDNESEQYDKIVPEAE*
Ga0129327_100440608	F058911	N/A	LDNGNKGTILGVKGSSKDGNTKFVKVFAQVGVLFKGDDKFTGDMNYPEAGGQKGLIGWINESGNILSGYKNEPRPKQAKPQSKEIPF*