Scaffold Ga0164294_10034434

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10034434
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4032
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F006744	Metagenome / Metatranscriptome	365	Y
F076101	Metagenome / Metatranscriptome	118	Y
F095359	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1003443413	F095359	AGGAG	MTIKIGGLGQEISCYCPICSEKMTHMCIATLGGMHSKGTIRYAWQCNNCELELKSDSNGYAKLLKEMENV*
Ga0164294_100344345	F076101	GGA	MYKLTLSYDGNAPHWQQDYANEFDAWKDFFAFVDWGFADKFSTVNLYNSEMKCFTKIFYRENRKVVEVK*
Ga0164294_100344348	F006744	AGG	MNLDEFKKHVLATREASKAEALSVLSATITKTNEGENQNG*
Ga0164294_100344349	F000447	N/A	MDWFGGLMGYIEIFRMNEEGAGWVDLSEATPDELFNIELGLLEEGAFE*