Scaffold Ga0164294_10014101

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10014101
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6596
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F042872	Metagenome	157	Y
F072095	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1001410113	F072095	AGG	MIRDLEQEGVLPISAAQSYGSAQLSQTTALIDLQTKHRDLRNRLDRIEEILESLLKKSGV
Ga0164294_1001410115	F042872	N/A	MSLPSIINQIESSNCTVGSNPTPSDAYHYNDLRRNGNTAVITDPKKAHYQQLNLNSRGGYDLTPDAFVYHPNPAVCRMWHAQHEASK*
Ga0164294_100141012	F007747	AGGA	MKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKQLKKDQEAVIEYVITKALEGLVKK*
Ga0164294_100141016	F005502	AGG	MRTLLSFIALLGFTTTKLSNALIDLRPLAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLGRKIRLIGTAWEWKAVDTGTAVKSKKASRGKLPVVDVFAASEKQFNWMRLPKVATVEIRE*
Ga0164294_100141017	F016963	GGAGG	VIEILPEQSTHEQLLNRVRSLARELAEAKAALAAAEGRENNLIDRIRAGL*