Scaffold Ga0164294_10011271

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10011271
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7438
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (29.63%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F048123	Metagenome / Metatranscriptome	148	Y
F049419	Metagenome / Metatranscriptome	146	Y
F062446	Metagenome / Metatranscriptome	130	Y
F064403	Metagenome / Metatranscriptome	128	N
F078229	Metagenome / Metatranscriptome	116	Y
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1001127114	F064403	GGAG	MINPRSKILSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAQQFEFKF*
Ga0164294_1001127115	F036564	GGAG	MKMGRVCLDLNYIVDMDNQEMVERAIECLYEDLMQGVKYGNITNWIDVIEDKNAKEDMIPEFLLEKEND*
Ga0164294_100112712	F062446	N/A	MTFKPIKVIAFILIVLAWILMTFFFVGCANVSYKTIPDGMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGVTY*
Ga0164294_1001127122	F078229	N/A	MSDIKYTYYVEQDKDKDGNYIQSFSVYKTPVVKTIRLKTFKKLSEANDFLEKYESN*
Ga0164294_1001127123	F034827	N/A	MKYTITSQDKEALTEFDKIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSNKKRNTLNDPDGQQGNAVYKLNARISIVIL*
Ga0164294_1001127124	F048123	GGA	MKPRYDFSKGKLISYDGEIIEFGDATLVDKYADQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYKFSLTNSSNISKIAERMYNFRPF*
Ga0164294_1001127125	F104482	N/A	MTSEEFEKAMKAQGRLVSKVYYRITFKGMGLYILNSFKFKLFPKFFYMNGKYFTECGFNWLGWIFEFQWNR*
Ga0164294_1001127127	F032536	N/A	FLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYIGKEDDFVFNTTLGCHIDKITGLEISLDQKEYEYVLDEIIFALQMIVNEEDSGVGLEELYEVYPKGFDPIKDRQMFLTRQEDGTSLVEFETKDNIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD*
Ga0164294_100112715	F016774	N/A	MPPKNNKIIITQDHLDSLNHWRNEALKLEKSYHSKDPEKERTCRNMINKYLDDVLSYNKNIKEKSKNKV*
Ga0164294_100112719	F049419	N/A	MKLPKLDLLDLATTYIFFGLIYGTIITLTWNYLFESITFVHLSILQGFGMHLIAKILFGNTSTNYISNFYSPKTPDLDKIDSYLKEIQADLDKEADEVEKQYEDLDKKD*